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airway
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1
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2
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1.9k
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airway package not compatible with R version 4.1.2 (2021-11-01)
airway
updated 2.3 years ago by
ATpoint
★ 4.0k • written 2.3 years ago by
j.jacob1
• 0
0
votes
1
reply
668
views
RNA-Seq Workflow Vignette - library(airway) Missing "quants" directory
RNASeq
DESeq2
airway
updated 2.4 years ago by
Michael Love
41k • written 2.4 years ago by
dmbergau
• 0
5
votes
8
replies
1.0k
views
Tibble error when installing bioconductor "airways"
airway
4.1 years ago
brest
• 0
0
votes
2
replies
1.3k
views
Is there a data package containing complex RNA-Seq data?
RNAseqdataset
airway
deseq2
rangedsummarizedexperiment
rnaseqgene
updated 6.1 years ago by
mario.zanfardino
▴ 160 • written 6.1 years ago by
ap3637
• 0
1
vote
5
replies
3.8k
views
installation of "airway" had non-zero exit status
airway
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
liyi983923
• 0
1
vote
3
replies
5.5k
views
package ‘airway’ is not available (for R version 3.2.2)
airway
updated 8.5 years ago by
Dan Tenenbaum
★ 8.2k • written 8.5 years ago by
jmmonroykuhn
• 0
0
votes
1
reply
1.1k
views
error in bioc2015rnaseq tutorial
deseq2
airway
updated 8.7 years ago by
Michael Love
41k • written 8.7 years ago by
pcantalupo
▴ 10
7 results • Page
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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