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align
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0
votes
9
replies
2.5k
views
mapping FASTQ files to single gene (fluorescent reporter)
rsubread
alignment
align
5.3 years ago
A
▴ 40
5
votes
6
replies
1.4k
views
Improving the performance of the align function from Rsubread for old Roche454 reads
align
rsubread
roche454
rnaseq
updated 4.9 years ago by
Wei Shi
★ 3.6k • written 5.0 years ago by
Raito92
▴ 60
5
votes
6
replies
1.6k
views
Rsubread malloc(): memory corruption
Rsubread
malloc
align
updated 4.4 years ago by
Gordon Smyth
50k • written 4.6 years ago by
Konstantinos Yeles
▴ 80
1
vote
5
replies
2.3k
views
Error: Input Files have different Amount of Reads
SubRead
Align
Subjunc
updated 3.7 years ago by
James W. MacDonald
65k • written 3.7 years ago by
abano
• 0
1
vote
5
replies
1.7k
views
Error using Rsubread align: caugh segfault invalid permissions
rsubread
align
segfault
updated 7.8 years ago by
Wei Shi
★ 3.6k • written 7.8 years ago by
gerard_llimos
▴ 10
0
votes
4
replies
1.2k
views
segfault "memory not mapped" using align from Rsubread
Rsubread
align
4.0 years ago
Joseph Fass
▴ 70
2
votes
2
replies
1.3k
views
Rsubread doesn't output a .bai file
Rsubread
align
Alignment
updated 2.7 years ago by
Gordon Smyth
50k • written 2.8 years ago by
mike_flower
• 0
0
votes
1
reply
1.7k
views
RSubread 0% mapping
rsubread
mapping
featurecounts
align
8.3 years ago
Jo
▴ 30
0
votes
0
replies
575
views
Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom
Align
MicroarrayData
Alignment
Microarray
13 months ago
jsharif
• 0
0
votes
0
replies
688
views
SUBREAD Aligning reads with reference genome - Error in align The number of input file names is different from the number of output file names.
align
Alignment
subread
24 months ago
saira
• 0
10 results • Page
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
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