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alignment
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6.4k
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BAM files to Genomic Ranges object
Alignment
convert
Repitools
Alignment
convert
Repitools
updated 4 months ago by
Marge
• 0 • written 11.2 years ago by
José Luis Lavín
▴ 280
0
votes
2
replies
623
views
Probe off-target prediction: Identifying short sequence matches - potentially with mismatches & indels - in a transcriptome
Microarray
Alignment
Biostrings
written 11 months ago by
sandmann.t
▴ 70
0
votes
2
replies
551
views
R session aborts after running align function on Rsubread
Rsubread
Alignment
updated 7 months ago by
Wei Shi
★ 3.6k • written 7 months ago by
amanda.gutierrez
• 0
0
votes
3
replies
539
views
Multitasking and Rbwa
Rbwa
Alignment
written 10 months ago by
Franck RICHARD
• 0
0
votes
1
reply
380
views
Generate false reads for testing
mgu74bv2cdf
Software
Alignment
updated 9 months ago by
James W. MacDonald
65k • written 9 months ago by
Franck RICHARD
• 0
5 results • Page
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Answer: Merging featureCounts output for different species
by
Michael Love
41k
Bioconductor support site is for posting questions about software. Try biostars.
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
Answer: Microarray Limma Model fitting and DEG
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