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Bioconductor ALL

11 months ago • updated 10 months ago simone.tiberi • 0

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ALL The DifferentialRegulation PathNet

updated 14 months ago by heritageericsson • 0 • written 14 months ago by Mine • 0

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updated 21 months ago by James W. MacDonald 65k • written 21 months ago by xxxsarahkimxxx • 0

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biocLite update all default ask

updated 5.2 years ago by Fischer-philipp ▴ 30 • written 5.2 years ago by rgiannico ▴ 10

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bioconductor ALL linear model

updated 5.7 years ago by Gordon Smyth 50k • written 5.7 years ago by detroit.drive • 0

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bioconductor ALL R Job

5.7 years ago detroit.drive • 0

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ALL bioconductor biobase exprs

updated 5.7 years ago by Martin Morgan 25k • written 5.7 years ago by detroit.drive • 0

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updated 7.4 years ago by Marcel Ramos 690 • written 7.4 years ago by mdfislam89 • 0

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installation packages bioconductor all

updated 8.4 years ago by Martin Morgan 25k • written 8.4 years ago by av • 0

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Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Comment: get BM error by Fara • 0

Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…

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Answer: Gene set analysis: GSVA, Z-Score, and fold-changes

Answer: FilterByExpr low counts with small sample size

Answer: get BM error

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

Comment: Different Shrunk Log2FC according with reference

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