Bioconductor All

Showing : all • reset

votes

2.7k

views

installation packages bioconductor all

updated 8.4 years ago by Martin Morgan 25k • written 8.4 years ago by av • 0

votes

replies

2.3k

views

ALL bioconductor biobase exprs

updated 5.7 years ago by Martin Morgan 25k • written 5.7 years ago by detroit.drive • 0

vote

replies

2.0k

views

biocLite update all default ask

updated 5.2 years ago by Fischer-philipp ▴ 30 • written 5.2 years ago by rgiannico ▴ 10

votes

1.7k

views

ALL

updated 20 months ago by James W. MacDonald 65k • written 21 months ago by xxxsarahkimxxx • 0

votes

replies

1.4k

views

bioconductor ALL R Job

5.7 years ago detroit.drive • 0

votes

replies

1.4k

views

bioconductor ALL linear model

updated 5.7 years ago by Gordon Smyth 50k • written 5.7 years ago by detroit.drive • 0

votes

1.3k

views

R ALL

updated 7.4 years ago by Marcel Ramos 690 • written 7.4 years ago by mdfislam89 • 0

votes

replies

817

views

Bioconductor ALL

10 months ago • updated 9 months ago simone.tiberi • 0

votes

477

views

ALL The DifferentialRegulation PathNet

updated 13 months ago by heritageericsson • 0 • written 14 months ago by Mine • 0

9 results • Page 1 of 1

Recent ...

Replies

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks for the answer. Actually, processing one file and keeping it in memory wasn't the problem, is more processing all the 15 files to bu…

Answer: Differentially expressed genes in monocle pseudotime by Gordon Smyth 50k

You might try the methods in this paper: Cheng J, Smyth GK*, Chen Y* (2023). Unraveling the timeline of gene expression: A pseudotempora…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you Michael for your attention to my question. I am truly grateful. I subsetted the data using lines of codes to include only the g…

Comment: [DiffBind] Obtaining normalization factors by Henry ▴ 10

I see, thank you for your suggestion! I managed to use a separate RLE normalization to obtain the size factors.

Answer: Memory errors using read.bismark? by Peter Hickey ▴ 690

Thanks for sharing an example file. This is a very large non-CpG methylation dataset, which are tricky to work with for a number of reason…

Votes

Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

Answer: GSVA error

Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA

Awards • All