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allelicimbalance
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7
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2.1k
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Allele Specific Expression Using edgeR
edger
allelicimbalance
8.0 years ago
ugwu.nelson
▴ 10
1
vote
1
reply
972
views
Does the AI package also allow more than one seqlevel?
AllelicImbalance
updated 8.5 years ago by
lasfol
▴ 10 • written 8.5 years ago by
sannysandra93
• 0
1
vote
1
reply
954
views
DESeq2 for allele-specific expression with contrasts between conditions
DESeq2
AllelicImbalance
edgeR
RNASeq
updated 2.8 years ago by
Michael Love
41k • written 2.8 years ago by
Katya
• 0
0
votes
2
replies
1.3k
views
Error message from 'scanForHeterozygotes' function in AllelicImbalance package
allelicimbalance
updated 8.9 years ago by
Jesper Robert Gadin
▴ 20 • written 9.2 years ago by
JK
▴ 10
0
votes
4
replies
1.4k
views
AllelicImbalance with VCFs?
RNASeq
Cancer
trio
AllelicImbalance
RNASeq
Cancer
trio
AllelicImbalance
updated 10.3 years ago by
Jesper Robert Gadin
▴ 20 • written 10.3 years ago by
Tim Triche, Jr.
▴ 10
0
votes
2
replies
1.4k
views
Error using 'scanForHeterozygotes' function in AllelicImbalance package
allelicimbalance
updated 8.9 years ago by
Jesper Robert Gadin
▴ 20 • written 9.1 years ago by
JK
▴ 10
0
votes
1
reply
1.1k
views
AlleicImbalance error reading in BAM files
allelicimbalance
updated 9.3 years ago by
Martin Morgan
25k • written 9.3 years ago by
JK
▴ 10
0
votes
2
replies
1.2k
views
AllelicImbalance error with getAlleleCounts
allelicimbalance
getallelecounts
updated 9.2 years ago by
Valerie Obenchain
★ 6.8k • written 9.3 years ago by
JK
▴ 10
8 results • Page
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Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
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Answer: OrgDb for maize
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How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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