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allelicimbalance
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Allele Specific Expression Using edgeR
edger
allelicimbalance
7.9 years ago
ugwu.nelson
▴ 10
0
votes
2
replies
1.4k
views
Error using 'scanForHeterozygotes' function in AllelicImbalance package
allelicimbalance
updated 8.8 years ago by
Jesper Robert Gadin
▴ 20 • written 9.1 years ago by
JK
▴ 10
0
votes
4
replies
1.4k
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AllelicImbalance with VCFs?
RNASeq
Cancer
trio
AllelicImbalance
RNASeq
Cancer
trio
AllelicImbalance
updated 10.2 years ago by
Jesper Robert Gadin
▴ 20 • written 10.2 years ago by
Tim Triche, Jr.
▴ 10
0
votes
2
replies
1.3k
views
Error message from 'scanForHeterozygotes' function in AllelicImbalance package
allelicimbalance
updated 8.8 years ago by
Jesper Robert Gadin
▴ 20 • written 9.1 years ago by
JK
▴ 10
0
votes
2
replies
1.2k
views
AllelicImbalance error with getAlleleCounts
allelicimbalance
getallelecounts
updated 9.2 years ago by
Valerie Obenchain
★ 6.8k • written 9.2 years ago by
JK
▴ 10
0
votes
1
reply
1.1k
views
AlleicImbalance error reading in BAM files
allelicimbalance
updated 9.2 years ago by
Martin Morgan
25k • written 9.2 years ago by
JK
▴ 10
1
vote
1
reply
956
views
Does the AI package also allow more than one seqlevel?
AllelicImbalance
updated 8.4 years ago by
lasfol
▴ 10 • written 8.4 years ago by
sannysandra93
• 0
1
vote
1
reply
925
views
DESeq2 for allele-specific expression with contrasts between conditions
DESeq2
AllelicImbalance
edgeR
RNASeq
updated 2.8 years ago by
Michael Love
41k • written 2.8 years ago by
Katya
• 0
8 results • Page
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Comment: fgsea fork
by
Sofa
• 0
Workshops and summer schools offer immersive learning experiences outside traditional academic settings, catering to diverse interests and …
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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