Bioconductor Allelicimbalance

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edger allelicimbalance

8.0 years ago ugwu.nelson ▴ 10

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AllelicImbalance

updated 8.5 years ago by lasfol ▴ 10 • written 8.5 years ago by sannysandra93 • 0

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DESeq2 AllelicImbalance edgeR RNASeq

updated 2.9 years ago by Michael Love 41k • written 2.9 years ago by Katya • 0

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allelicimbalance

updated 8.9 years ago by Jesper Robert Gadin ▴ 20 • written 9.2 years ago by JK ▴ 10

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RNASeq Cancer trio AllelicImbalance RNASeq Cancer trio AllelicImbalance

updated 10.3 years ago by Jesper Robert Gadin ▴ 20 • written 10.3 years ago by Tim Triche, Jr. ▴ 10

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allelicimbalance

updated 8.9 years ago by Jesper Robert Gadin ▴ 20 • written 9.1 years ago by JK ▴ 10

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allelicimbalance

updated 9.3 years ago by Martin Morgan 25k • written 9.3 years ago by JK ▴ 10

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allelicimbalance getallelecounts

updated 9.2 years ago by Valerie Obenchain ★ 6.8k • written 9.3 years ago by JK ▴ 10

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Comment: get BM error by Fara • 0

Thank you for the reply. The examples are these. ENSGACG00000014473 ENSGACG00000015168 ENSGACG00000007529

Comment: get BM error by Mike Smith ★ 6.5k

Can you provide an example of the Ensemble IDs you're trying to convert?

Comment: How to retrieve gene ontology GO class? by bandconductor • 0

Sorry I wasn't clear before. What I mean is the all the information associated with the go term, such as description and evidence. I have …

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

How am i making the data? I am using the DESeq2 output data which I had generated

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k

Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …

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Comment: get BM error

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

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