Bioconductor Altcdfenvs

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affymetrix microarrays frmatools altcdfenvs

updated 6.1 years ago by Matthew McCall ▴ 830 • written 6.1 years ago by osieman52 • 0

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cdf probe affy altcdfenvs cdf probe affy altcdfenvs

12.8 years ago Ariel Grostern ▴ 80

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cdf probe affy altcdfenvs cdf probe affy altcdfenvs

updated 12.8 years ago by James W. MacDonald 65k • written 12.8 years ago by Ariel Grostern ▴ 80

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cdf probe affy altcdfenvs cdf probe affy altcdfenvs

12.8 years ago Ariel Grostern ▴ 80

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probe altcdfenvs probe altcdfenvs

updated 13.5 years ago by Laurent Gautier ★ 2.3k • written 13.5 years ago by Jack Luo ▴ 440

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cdf probe altcdfenvs cdf probe altcdfenvs

18.0 years ago michael driscoll ▴ 30

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probe affy makecdfenv matchprobes altcdfenvs probe affy makecdfenv matchprobes altcdfenvs

updated 18.4 years ago by lgautier@altern.org ▴ 950 • written 18.5 years ago by Norman Pavelka ▴ 190

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altcdfenvs altcdfenvs

updated 18.5 years ago by lgautier@altern.org ▴ 950 • written 18.5 years ago by Nicholas Lewin-Koh ▴ 430

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cdf affy altcdfenvs cdf affy altcdfenvs

updated 18.7 years ago by Sean Davis 21k • written 18.7 years ago by Rifat Hamoudi ▴ 30

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probe affy altcdfenvs probe affy altcdfenvs

18.8 years ago Mette Langaas ▴ 10

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cdf probe altcdfenvs cdf probe altcdfenvs

19.1 years ago Wu, Xiwei ▴ 350

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GO cdf PROcess altcdfenvs GO cdf PROcess altcdfenvs

19.8 years ago Lana Schaffer ▴ 80

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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0