Bioconductor Altcdfenvs

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cdf probe altcdfenvs cdf probe altcdfenvs

18.0 years ago michael driscoll ▴ 30

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affymetrix microarrays frmatools altcdfenvs

updated 6.1 years ago by Matthew McCall ▴ 830 • written 6.1 years ago by osieman52 • 0

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probe altcdfenvs probe altcdfenvs

updated 13.5 years ago by Laurent Gautier ★ 2.3k • written 13.5 years ago by Jack Luo ▴ 440

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cdf affy altcdfenvs cdf affy altcdfenvs

updated 18.7 years ago by Sean Davis 21k • written 18.7 years ago by Rifat Hamoudi ▴ 30

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855

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cdf probe affy altcdfenvs cdf probe affy altcdfenvs

updated 12.8 years ago by James W. MacDonald 65k • written 12.8 years ago by Ariel Grostern ▴ 80

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altcdfenvs altcdfenvs

updated 18.5 years ago by lgautier@altern.org ▴ 950 • written 18.5 years ago by Nicholas Lewin-Koh ▴ 430

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probe affy makecdfenv matchprobes altcdfenvs probe affy makecdfenv matchprobes altcdfenvs

updated 18.4 years ago by lgautier@altern.org ▴ 950 • written 18.5 years ago by Norman Pavelka ▴ 190

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GO cdf PROcess altcdfenvs GO cdf PROcess altcdfenvs

19.8 years ago Lana Schaffer ▴ 80

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probe affy altcdfenvs probe affy altcdfenvs

18.8 years ago Mette Langaas ▴ 10

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cdf probe affy altcdfenvs cdf probe affy altcdfenvs

12.8 years ago Ariel Grostern ▴ 80

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cdf probe affy altcdfenvs cdf probe affy altcdfenvs

12.8 years ago Ariel Grostern ▴ 80

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cdf probe altcdfenvs cdf probe altcdfenvs

19.1 years ago Wu, Xiwei ▴ 350

12 results • Page 1 of 1

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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k

> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Answer: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Votes

Answer: How to retrieve gene ontology GO class from gene list?

C: when to apply quantile normalization with voom in limma/voom framework with RNA-

A: How to know if I should use voomWithQualityWeights() or not?

A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom

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