Bioconductor Alternative splicing

Showing : alternative splicing • reset

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3.7k

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sgseq splicing alternative splicing

updated 9.8 years ago by Leonard Goldstein ▴ 260 • written 9.8 years ago by vakul.mohanty ▴ 20

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sgseq alternative splicing rna seq

updated 16 months ago by Sara • 0 • written 6.1 years ago by 116100016 • 0

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aspli readCounts rna-seq alternative splicing AS

6.8 years ago fernandalpcosta ▴ 10

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limma voom alternative splicing

9.8 years ago osa.zuta ▴ 40

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maser R rMATs alternative splicing

7.3 years ago Reza • 0

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2.2k

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rna-seq alternative splicing SGSeq

7.1 years ago andrea.bast • 0

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1.3k

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rnaseq alternative splicing ASpli

7.1 years ago nicolas.guyon2 • 0

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R alternative splicing ASpli AsDiscover

7.0 years ago abdul rawoof ▴ 60

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rna seq SGSeq Alternative splicing

updated 6.2 years ago by Leonard Goldstein ▴ 260 • written 6.2 years ago by 116100016 • 0

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2.2k

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dexseq alternative splicing exon skipping

updated 10.8 years ago by Simon Anders ★ 3.8k • written 10.8 years ago by ebadr • 0

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

5.2 years ago noahhelton98 ▴ 20

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DEXSeq DESeq2 dexseq deseq2 alternative splicing

10.2 years ago Fahmi Nazarie • 0

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1.4k

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deseq2 dexseq alternative splicing

updated 10.0 years ago by Michael Love 43k • written 10.1 years ago by sahiilseth • 0

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limma rna-seq alternative splicing

updated 8.2 years ago by Gordon Smyth 53k • written 8.2 years ago by lirongrossmann ▴ 80

14 results • Page 1 of 1

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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0

For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to Lluís Revilla Sancho ▴ 760

Popular Question to James W. MacDonald 68k