Bioconductor Analysis

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612

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non-model enrichment organisms analysis

updated 6 months ago by Guido Hooiveld ★ 3.6k • written 8 months ago by yuhang • 0

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828

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Proteomics analysis

updated 11 months ago by jeroen.gilis ▴ 90 • written 11 months ago by Shakiba • 0

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326

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R analysis p_values RNASeq

updated 16 months ago by Sean Davis 21k • written 16 months ago by johndavidgriner74 • 0

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546

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microarray protein analysis ProteomeProfiler

updated 3.3 years ago by Gordon Smyth 47k • written 3.3 years ago by hcnbox • 0

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1.2k

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minfi 450k EPIC analysis

updated 3.8 years ago by James W. MacDonald 63k • written 3.8 years ago by maduran • 0

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526

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ddCt import analysis R qRTPCR

updated 3.8 years ago by Zhang, Jitao David ▴ 120 • written 3.8 years ago by mohammedtoufiq91 ▴ 10

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619

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genomics analysis bioinformatics Job

4.0 years ago jmaanaki • 0

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1.2k

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agilent microarrays microrna analysis

5.8 years ago arisarkar88 ▴ 40

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732

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microarray analysis

6.0 years ago arisarkar88 ▴ 40

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1.4k

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mta10 affy analysis

6.8 years ago iankoudinova ▴ 10

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1.4k

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microarray affymetrix microarrays analysis

updated 7.7 years ago by Guido Hooiveld ★ 3.6k • written 7.7 years ago by Michaela.Fuchs • 0

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1.1k

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edger data analysis

7.9 years ago Pau Marc Muñoz Torres ▴ 20

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1.4k

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cummeRbund Script analysis RNAseq cuffdiff

updated 8.1 years ago by andrew.j.skelton73 ▴ 360 • written 8.1 years ago by mfahim • 0

13 results • Page 1 of 1

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Answer: multiple filters in biomaRt by RuBBiT0 ▴ 10

First, yes, one gene could be related to several GO ID, and the result is based on the annotation package you use. Second, could you pro…

Comment: Diffbind "No genome detected" by kyliecode • 0

Hi Dr. Stark, Thanks very much for your reply! The bam files were output from nf-core/chipseq pipeline and for some reason, they do not ha…

Answer: Discrepancy between DESeq2 files produced in Galaxy and R(RStudio) by Michael Love 40k

I guess that Galaxy may be using some kind of LFC shrinkage, but without seeing their code I wouldn't know for sure. Shrinkage generally…

Comment: TCGAbiolinks cannot find bcr_patient_barcode by Habil Zare ▴ 170

I checked your example with the devel version 2.29.6 on Bioc and it worked fine. Thanks for the fix!

Answer: error in ChAMP loading file by jenniferbrowngates • 0

I got a lot of information from this website about different topics which is beneficial for me too so I thank this site and also suggest a …

Votes

Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)

Comment: Error: biomaRt has encountered an unexpected server error.

Comment: Interpret plot from DiffBind

Awards • All

Scholar to Tiago C. Silva ▴ 270