Bioconductor Analysis

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1.8k

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mta10 affy analysis

7.7 years ago iankoudinova ▴ 10

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1.7k

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cummeRbund Script analysis RNAseq cuffdiff

updated 9.0 years ago by andrew.j.skelton73 ▴ 370 • written 9.0 years ago by mfahim • 0

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1.4k

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edger data analysis

8.8 years ago Pau Marc Muñoz Torres ▴ 20

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811

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ddCt import analysis R qRTPCR

updated 4.7 years ago by Zhang, Jitao David ▴ 120 • written 4.7 years ago by mohammedtoufiq91 ▴ 10

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1.6k

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microarray affymetrix microarrays analysis

updated 8.6 years ago by Guido Hooiveld ★ 3.9k • written 8.6 years ago by Michaela.Fuchs • 0

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1.4k

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agilent microarrays microrna analysis

6.7 years ago arisarkar88 ▴ 40

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1.8k

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minfi 450k EPIC analysis

updated 4.7 years ago by James W. MacDonald 65k • written 4.7 years ago by maduran • 0

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892

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microarray protein analysis ProteomeProfiler

updated 4.1 years ago by Gordon Smyth 50k • written 4.1 years ago by hcnbox • 0

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1.2k

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non-model enrichment organisms analysis

updated 16 months ago by Guido Hooiveld ★ 3.9k • written 19 months ago by yuhang • 0

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506

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analysis R GOfuncR

updated 10 months ago by Lluís Revilla Sancho ▴ 730 • written 10 months ago by Eliza • 0

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1.7k

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Proteomics analysis

updated 21 months ago by jeroen.gilis ▴ 90 • written 21 months ago by Shakiba • 0

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887

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genomics analysis bioinformatics Job

4.9 years ago jmaanaki • 0

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910

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microarray analysis

6.9 years ago arisarkar88 ▴ 40

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543

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R analysis p_values RNASeq

updated 2.3 years ago by Sean Davis 21k • written 2.3 years ago by johndavidgriner74 • 0

14 results • Page 1 of 1

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…

Answer: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…

Votes

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0