Bioconductor Analysis

Showing : analysis • reset

votes

502

views

analysis R GOfuncR

updated 10 months ago by Lluís Revilla Sancho ▴ 730 • written 10 months ago by Eliza • 0

votes

replies

1.2k

views

non-model enrichment organisms analysis

updated 16 months ago by Guido Hooiveld ★ 3.9k • written 18 months ago by yuhang • 0

votes

replies

1.7k

views

Proteomics analysis

updated 21 months ago by jeroen.gilis ▴ 90 • written 21 months ago by Shakiba • 0

votes

replies

535

views

R analysis p_values RNASeq

updated 2.2 years ago by Sean Davis 21k • written 2.2 years ago by johndavidgriner74 • 0

vote

replies

884

views

microarray protein analysis ProteomeProfiler

updated 4.1 years ago by Gordon Smyth 50k • written 4.1 years ago by hcnbox • 0

votes

1.8k

views

minfi 450k EPIC analysis

updated 4.6 years ago by James W. MacDonald 65k • written 4.6 years ago by maduran • 0

vote

replies

805

views

ddCt import analysis R qRTPCR

updated 4.7 years ago by Zhang, Jitao David ▴ 120 • written 4.7 years ago by mohammedtoufiq91 ▴ 10

votes

replies

880

views

genomics analysis bioinformatics Job

4.9 years ago jmaanaki • 0

votes

replies

1.4k

views

agilent microarrays microrna analysis

6.7 years ago • updated 6.6 years ago arisarkar88 ▴ 40

votes

replies

909

views

microarray analysis

6.9 years ago arisarkar88 ▴ 40

votes

replies

1.8k

views

mta10 affy analysis

7.7 years ago iankoudinova ▴ 10

votes

1.6k

views

microarray affymetrix microarrays analysis

updated 8.6 years ago by Guido Hooiveld ★ 3.9k • written 8.6 years ago by Michaela.Fuchs • 0

votes

replies

1.4k

views

edger data analysis

8.8 years ago Pau Marc Muñoz Torres ▴ 20

votes

replies

1.7k

views

cummeRbund Script analysis RNAseq cuffdiff

updated 9.0 years ago by andrew.j.skelton73 ▴ 370 • written 9.0 years ago by mfahim • 0

14 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

Votes

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Awards • All