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1.8k
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tutorial/documentation to use oligo/affy for mta1.0 Affymetrix arrays
mta10
affy
analysis
7.7 years ago
iankoudinova
▴ 10
0
votes
1
reply
1.7k
views
How to analyse 450k and EPIC methylation data together?
minfi
450k
EPIC
analysis
updated 4.6 years ago by
James W. MacDonald
65k • written 4.6 years ago by
maduran
• 0
2
votes
5
replies
1.6k
views
proteomics analysis
Proteomics
analysis
updated 20 months ago by
jeroen.gilis
▴ 90 • written 20 months ago by
Shakiba
• 0
2
votes
2
replies
1.6k
views
Help with cummeRbund
cummeRbund
Script
analysis
RNAseq
cuffdiff
updated 8.9 years ago by
andrew.j.skelton73
▴ 370 • written 8.9 years ago by
mfahim
• 0
0
votes
1
reply
1.6k
views
.DTT file Affymetrix
microarray
affymetrix microarrays
analysis
updated 8.5 years ago by
Guido Hooiveld
★ 3.9k • written 8.5 years ago by
Michaela.Fuchs
• 0
0
votes
4
replies
1.4k
views
Agilent microrna microaaray
agilent microarrays
microrna
analysis
6.6 years ago
arisarkar88
▴ 40
2
votes
4
replies
1.4k
views
edgeR, data processing with some missed values
edger
data
analysis
8.8 years ago
Pau Marc Muñoz Torres
▴ 20
0
votes
4
replies
1.2k
views
Questions about non-model organisms gene enrichment analysis
non-model
enrichment
organisms
analysis
updated 15 months ago by
Guido Hooiveld
★ 3.9k • written 18 months ago by
yuhang
• 0
0
votes
0
replies
899
views
Analyzing "Hitachi human oligo chip-drug responsive genes" platform data
microarray
analysis
6.8 years ago
arisarkar88
▴ 40
1
vote
4
replies
869
views
package to analyze generic protein microarray data
microarray
protein
analysis
ProteomeProfiler
updated 4.1 years ago by
Gordon Smyth
50k • written 4.1 years ago by
hcnbox
• 0
0
votes
0
replies
868
views
Job:
Bioinformatics Scientist - BC Cancer Research Center, Vancouver, B
genomics
analysis
bioinformatics
Job
4.8 years ago
jmaanaki
• 0
1
vote
2
replies
787
views
Support for import of custom matrix data in the ddCt R package
ddCt
import
analysis
R
qRTPCR
updated 4.6 years ago by
Zhang, Jitao David
▴ 120 • written 4.6 years ago by
mohammedtoufiq91
▴ 10
0
votes
0
replies
523
views
RNA seq of 4 groups p_values
R
analysis
p_values
RNASeq
updated 2.2 years ago by
Sean Davis
21k • written 2.2 years ago by
johndavidgriner74
• 0
0
votes
1
reply
466
views
Gene enrichment analysis
analysis
R
GOfuncR
updated 9 months ago by
Lluís Revilla Sancho
▴ 730 • written 9 months ago by
Eliza
• 0
14 results • Page
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Recent ...
Replies
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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