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2
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2
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1.7k
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Help with cummeRbund
cummeRbund Script analysis RNAseq cuffdiff
updated 9.0 years ago by ▴ 370 • written 9.0 years ago by • 0
2
votes
4
replies
1.4k
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edgeR, data processing with some missed values
edger data analysis
8.8 years ago Pau Marc Muñoz Torres ▴ 20
2
votes
5
replies
1.7k
views
proteomics analysis
Proteomics analysis
updated 21 months ago by ▴ 90 • written 21 months ago by • 0
1
vote
2
replies
805
views
Support for import of custom matrix data in the ddCt R package
ddCt import analysis R qRTPCR
updated 4.7 years ago by ▴ 120 • written 4.7 years ago by ▴ 10
1
vote
4
replies
884
views
package to analyze generic protein microarray data
microarray protein analysis ProteomeProfiler
updated 4.1 years ago by 50k • written 4.1 years ago by • 0
0
votes
4
replies
1.4k
views
Agilent microrna microaaray
agilent microarrays microrna analysis
6.6 years ago arisarkar88 ▴ 40
0
votes
0
replies
880
views
Job: Bioinformatics Scientist - BC Cancer Research Center, Vancouver, B
genomics analysis bioinformatics Job
4.8 years ago jmaanaki • 0
0
votes
1
reply
1.8k
views
How to analyse 450k and EPIC methylation data together?
minfi 450k EPIC analysis
updated 4.6 years ago by 65k • written 4.6 years ago by • 0
0
votes
4
replies
1.2k
views
Questions about non-model organisms gene enrichment analysis
non-model enrichment organisms analysis
updated 16 months ago by ★ 3.9k • written 18 months ago by • 0
0
votes
0
replies
535
views
RNA seq of 4 groups p_values
R analysis p_values RNASeq
updated 2.2 years ago by 21k • written 2.2 years ago by • 0
0
votes
1
reply
502
views
Gene enrichment analysis
analysis R GOfuncR
updated 10 months ago by ▴ 730 • written 10 months ago by • 0
0
votes
3
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1.8k
views
tutorial/documentation to use oligo/affy for mta1.0 Affymetrix arrays
mta10 affy analysis
7.7 years ago iankoudinova ▴ 10
0
votes
1
reply
1.6k
views
.DTT file Affymetrix
microarray affymetrix microarrays analysis
updated 8.6 years ago by ★ 3.9k • written 8.6 years ago by • 0
0
votes
0
replies
909
views
Analyzing "Hitachi human oligo chip-drug responsive genes" platform data
microarray analysis
6.8 years ago arisarkar88 ▴ 40
14 results • Page 1 of 1
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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
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Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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