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annaffy
•
reset
0
votes
6
replies
1.4k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO
Survival
hgu95av2
mgu74av2
Ruuid
annotate
multtest
affy
graph
annaffy
RBGL
GOstats
updated 18.8 years ago by
Seth Falcon
★ 7.4k • written 18.8 years ago by
Dick Beyer
★ 1.4k
0
votes
4
replies
1.2k
views
rae230a/b data packages buggy?
Annotation
rae230a
rae230b
affy
annaffy
Annotation
rae230a
rae230b
affy
annaffy
updated 20.6 years ago by
John Zhang
★ 2.9k • written 20.6 years ago by
Claudio Lottaz
▴ 110
0
votes
5
replies
4.9k
views
Affymetrix probeset ids to gene symbols
annaffy
annaffy
updated 15.7 years ago by
MARIA STALTERI
▴ 160 • written 15.7 years ago by
peter robinson
▴ 300
0
votes
4
replies
972
views
Recent changes to Bioconductor packages
GO
annaffy
GO
annaffy
19.9 years ago • updated 19.8 years ago
madman@jimmy.harvard.edu
▴ 850
0
votes
4
replies
1.4k
views
coerce aafTable object into dataframe (annaffy)
annaffy
annaffy
18.1 years ago
Georg Otto
▴ 510
0
votes
4
replies
950
views
GO package
annaffy
annaffy
updated 18.4 years ago by
Seth Falcon
★ 7.4k • written 18.4 years ago by
Khan, Sohail
▴ 490
0
votes
3
replies
1.1k
views
Recent changes to Bioconductor packages
genefilter
affy
graph
Rgraphviz
limma
annaffy
genefilter
affy
graph
Rgraphviz
limma
20.6 years ago • updated 20.5 years ago
madman@jimmy.harvard.edu
▴ 850
0
votes
5
replies
2.6k
views
Issues about how to filter and annotate the MoGene-2_0-st and MoEx-1_0-st-v1 array probe sets
Annotation
probe
annotate
annaffy
oligo
ReportingTools
Annotation
probe
annotate
annaffy
updated 9.8 years ago by
Jason Hackney
▴ 160 • written 9.8 years ago by
James W. MacDonald
65k
0
votes
3
replies
1.0k
views
misnamed annotation environments with annaffy
Annotation
annaffy
Annotation
annaffy
updated 18.8 years ago by
Seth Falcon
★ 7.4k • written 18.8 years ago by
Jacob Michaelson
▴ 320
0
votes
3
replies
1.1k
views
INstalling devel version
Microarray
Pharmacogenomics
Annotation
GO
Cancer
cdf
probe
affy
makecdfenv
limma
annaffy
19.6 years ago
Mayte Suarez-Farinas
▴ 300
0
votes
9
replies
1.8k
views
problem with duplicateCorrelation and ExpressionSet objects
GO
Survival
cdf
Biobase
graph
limma
gcrma
annaffy
affyPLM
simpleaffy
biomaRt
Category
updated 16.9 years ago by
Seth Falcon
★ 7.4k • written 16.9 years ago by
Jenny Drnevich
★ 2.2k
0
votes
3
replies
1.1k
views
latest devel GO package not built in R2.0.0
GO
mouse4302
affy
annaffy
GO
mouse4302
affy
annaffy
updated 19.5 years ago by
John Zhang
★ 2.9k • written 19.5 years ago by
Dick Beyer
★ 1.4k
0
votes
3
replies
1.1k
views
Install of 1.5 Packages fails
GO
edd
genefilter
annaffy
affyPLM
marray
GO
edd
genefilter
annaffy
affyPLM
marray
updated 19.4 years ago by
rgentleman
★ 5.5k • written 19.4 years ago by
Thomas Girke
★ 1.7k
0
votes
2
replies
1.5k
views
annaffy: YEAST vs. Affy YEAST_2 annotation
Annotation
Yeast
probe
annaffy
AnnBuilder
Annotation
Yeast
probe
annaffy
AnnBuilder
updated 19.1 years ago by
Colin A. Smith
▴ 220 • written 19.1 years ago by
Jacob Michaelson
▴ 320
0
votes
2
replies
1.1k
views
problem with annaffy aafFunction function
GO
hgu95av2
rat2302
Biobase
annotate
reposTools
affy
annaffy
GO
hgu95av2
rat2302
affy
updated 18.4 years ago by
James W. MacDonald
65k • written 18.4 years ago by
Kimpel, Mark W
▴ 890
0
votes
2
replies
1.0k
views
2fold sigchanges from limma
GO
Survival
hgu133a2
annotate
hexbin
limma
gcrma
matchprobes
annaffy
GO
Survival
hexbin
updated 17.3 years ago by
Gordon Smyth
50k • written 17.3 years ago by
Ivan Baxter
▴ 60
0
votes
2
replies
1.6k
views
"AveExp" column has dissappeared from limma topTable
GO
Survival
annotate
geneplotter
affydata
limma
annaffy
affyPLM
GO
Survival
annotate
updated 17.0 years ago by
Gordon Smyth
50k • written 17.0 years ago by
Marcus Davy
▴ 680
0
votes
2
replies
1.1k
views
getURL in annaffy fails when object length==1 (or how to cope with collapsed lists, arrays, etc?)
annaffy
annaffy
updated 16.2 years ago by
Florian Hahne
▴ 540 • written 16.2 years ago by
Ana Rodrigues
▴ 30
0
votes
12
replies
2.0k
views
Building BioC 2.2 with R 2.7.0
GO
annaffy
simpleaffy
GO
annaffy
simpleaffy
updated 15.8 years ago by
Groot, Philip de
▴ 630 • written 15.8 years ago by
Atro Tossavainen
▴ 160
0
votes
7
replies
1.7k
views
Missing GeneSymbol and Name information in TopTable
Annotation
hgu133plus2
annaffy
affylmGUI
Annotation
hgu133plus2
annaffy
affylmGUI
updated 14.6 years ago by
Marc Carlson
★ 7.2k • written 14.6 years ago by
Kai Treuner
▴ 40
0
votes
3
replies
1.2k
views
annotation of affymetrix microarray data
annotate
annaffy
annotate
annaffy
updated 13.9 years ago by
Sean Davis
21k • written 13.9 years ago by
Taylor, Katie
▴ 90
0
votes
3
replies
1.4k
views
help with annaffy package
GO
annaffy
GO
annaffy
13.9 years ago
Taylor, Katie
▴ 90
0
votes
2
replies
1.2k
views
help with illumina microarray (DASL)
Microarray
Annotation
annaffy
lumi
Microarray
Annotation
annaffy
lumi
updated 13.9 years ago by
Pan Du
★ 1.2k • written 13.9 years ago by
Taylor, Katie
▴ 90
1
vote
10
replies
2.6k
views
Error installing Annaffy
affy
annaffy
go.db
kegg.db
updated 7.0 years ago by
James W. MacDonald
65k • written 7.0 years ago by
Angela
• 0
0
votes
1
reply
1.1k
views
Warning message with dChip method
Annotation
Normalization
GO
Cancer
moe430a
moe430b
cdf
affy
limma
gcrma
annaffy
PROcess
updated 20.0 years ago by
Rafael A. Irizarry
★ 2.3k • written 20.0 years ago by
Lizhe Xu
▴ 210
0
votes
1
reply
978
views
annotation problem with hgu133plus2
Annotation
GO
hgu133plus2
cdf
annotate
affy
siggenes
annaffy
Annotation
GO
hgu133plus2
18.9 years ago • updated 18.8 years ago
Yanqin Yang
▴ 250
0
votes
1
reply
1.3k
views
question about limma2annaffy
GO
Survival
Biobase
annotate
genefilter
geneplotter
affy
affydata
graph
limma
annaffy
updated 17.0 years ago by
James W. MacDonald
65k • written 17.0 years ago by
Jenny Drnevich
★ 2.2k
0
votes
1
reply
1.4k
views
limma2annaffy
GO
GUI
annaffy
oligo
oligoClasses
KEGGREST
GO
GUI
annaffy
oligo
oligoClasses
KEGGREST
updated 10.3 years ago by
James W. MacDonald
65k • written 10.3 years ago by
Guest User
★ 13k
0
votes
1
reply
737
views
OMIM and annaffy
affy
annaffy
affy
annaffy
updated 16.6 years ago by
James W. MacDonald
65k • written 16.6 years ago by
Mayte Suarez-Farinas
▴ 510
3
votes
1
reply
1.1k
views
Gene Ontology link in aaf.handler() not working
annaffy
aafTableAnn
Gene Ontology
aaf.handler()
updated 4.9 years ago by
James W. MacDonald
65k • written 4.9 years ago by
bjwiley23
• 0
0
votes
1
reply
920
views
help with multtest and annaffy
annaffy
annaffy
updated 13.9 years ago by
James W. MacDonald
65k • written 13.9 years ago by
Taylor, Katie
▴ 90
0
votes
2
replies
1.1k
views
affycoretools vennSelect problem
GO
Survival
annotate
genefilter
affy
graph
gcrma
annaffy
RBGL
GOstats
biomaRt
affyio
updated 15.8 years ago by
James W. MacDonald
65k • written 15.8 years ago by
PeadarÓGaora
▴ 30
0
votes
1
reply
1.6k
views
Help with GSEA package
hu6800
cdf
genefilter
multtest
affy
gcrma
siggenes
annaffy
GSEABase
hu6800
cdf
multtest
updated 13.3 years ago by
Martin Morgan
25k • written 13.3 years ago by
Jillian Rowe
▴ 20
0
votes
2
replies
3.9k
views
Human Gene 1.0 ST array
Annotation
probe
annaffy
Annotation
probe
annaffy
updated 15.5 years ago by
James W. MacDonald
65k • written 15.5 years ago by
Chandra Sekhar
▴ 10
0
votes
5
replies
1.2k
views
annotation information about ecoli2
Annotation
GO
probe
annaffy
Annotation
GO
probe
annaffy
updated 15.4 years ago by
James W. MacDonald
65k • written 15.4 years ago by
Minwook Kim
▴ 10
0
votes
1
reply
924
views
problem with the structure of a list of pathways
Genetics
Pathways
probe
annaffy
Genetics
Pathways
probe
annaffy
updated 14.8 years ago by
James W. MacDonald
65k • written 14.8 years ago by
Alberto Goldoni
▴ 60
0
votes
1
reply
889
views
Multiple genes per probeset
Annotation
Cancer
mouse4302
annaffy
ASSIGN
Annotation
Cancer
mouse4302
annaffy
ASSIGN
updated 13.9 years ago by
James W. MacDonald
65k • written 13.9 years ago by
Richard Friedman
★ 2.0k
0
votes
1
reply
880
views
GO problems with annaffy
GO
hgu133a
probe
reposTools
annaffy
GO
hgu133a
probe
reposTools
annaffy
updated 20.0 years ago by
Jose Duarte
▴ 100 • written 20.0 years ago by
Paolo Sirabella
▴ 10
0
votes
1
reply
897
views
error in annaffy (multiget)
annaffy
annaffy
updated 19.8 years ago by
Colin A. Smith
▴ 220 • written 19.8 years ago by
Mayte Suarez-Farinas
▴ 300
0
votes
2
replies
1.0k
views
list of annaffy .db files?
Annotation
annotate
annaffy
Annotation
annotate
annaffy
updated 13.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.6 years ago by
Andrew Einhorn
▴ 80
0
votes
2
replies
1.3k
views
probe to entrezID mapping with aafLocusLink
GO
hgu133plus2
probe
annaffy
convert
GO
hgu133plus2
probe
annaffy
convert
updated 14.3 years ago by
James W. MacDonald
65k • written 14.3 years ago by
Merja Heinaniemi
▴ 10
0
votes
1
reply
1.1k
views
Problems with packages: annaffy, GO, KEGG, golubEsets
GO
edd
annaffy
affyPLM
GO
edd
annaffy
affyPLM
updated 19.3 years ago by
rgentleman
★ 5.5k • written 19.3 years ago by
Vitalina Komashko
▴ 10
0
votes
1
reply
650
views
annaffy's annotation update
annaffy
annaffy
updated 19.2 years ago by
rgentleman
★ 5.5k • written 19.2 years ago by
claudio.is@libero.it
▴ 210
0
votes
1
reply
755
views
annaffy installation
annaffy
annaffy
updated 20.2 years ago by
Jeff Gentry
★ 3.9k • written 20.2 years ago by
Sylvain Pradervand
▴ 10
0
votes
2
replies
1.2k
views
Possible problem with Rhesus array annotation package
Annotation
GO
annotate
annaffy
Annotation
GO
annotate
annaffy
updated 12.7 years ago by
Marc Carlson
★ 7.2k • written 12.7 years ago by
blockaa@huskers.unl.edu
▴ 30
0
votes
1
reply
873
views
rbind in annaffy problem
GO
hgu95av2
rat2302
cdf
annotate
affy
graph
annaffy
RBGL
GOstats
biomaRt
GO
hgu95av2
updated 18.3 years ago by
James W. MacDonald
65k • written 18.3 years ago by
Kimpel, Mark W
▴ 890
0
votes
1
reply
1.1k
views
New Package: annaffy
Annotation
GO
rgu34a
probe
Biobase
annaffy
Annotation
GO
rgu34a
probe
Biobase
annaffy
updated 21.7 years ago by
Laurent Gautier
★ 2.3k • written 21.7 years ago by
Colin A. Smith
▴ 20
0
votes
2
replies
1.1k
views
AnnBuilder problem for mu11ksuba
Organism
mu11ksuba
annotate
limma
gcrma
matchprobes
annaffy
AnnBuilder
Organism
mu11ksuba
updated 18.0 years ago by
Ting-Yuan Liu FHCRC
▴ 780 • written 18.0 years ago by
Dick Beyer
★ 1.4k
0
votes
1
reply
864
views
Annaffy problem loading metadata
mouse4302
annaffy
mouse4302
annaffy
17.9 years ago
Bornman, Daniel M
▴ 110
0
votes
1
reply
742
views
error in annaffy
annaffy
annaffy
updated 16.9 years ago by
James W. MacDonald
65k • written 16.9 years ago by
Mayte Suarez-Farinas
▴ 510
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