Showing : annotate • reset
0
votes
18
replies
3.6k
views
Genbank to Unigene IDs
annotate AnnBuilder annotate AnnBuilder
updated 20.0 years ago by ▴ 10 • written 20.0 years ago by 50k
0
votes
11
replies
1.5k
views
Problem with "ragene10stprobeset.db" package
Annotation annotate Annotation annotate
updated 12.0 years ago by 65k • written 12.0 years ago by ▴ 20
0
votes
10
replies
1.7k
views
AnnBuilder doesn't work on gene information ("GENENAME", "SYMBOL", etc)
Microarray Annotation probe annotate affy AnnBuilder Microarray Annotation probe annotate
updated 17.8 years ago by ★ 2.9k • written 17.8 years ago by ★ 1.6k
0
votes
10
replies
3.0k
views
PAIR files -- feature set table
Microarray Annotation Organism annotate pdInfoBuilder Microarray Annotation Organism
updated 10.9 years ago by ★ 4.3k • written 10.9 years ago by ★ 13k
0
votes
9
replies
1.9k
views
variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?
VariantAnnotation Cancer Yeast annotate Biostrings VariantAnnotation VariantAnnotation
updated 10.2 years ago by 16k • written 10.2 years ago by ▴ 740
0
votes
8
replies
2.0k
views
AnnBuilder and Kegg
Pathways GO Survival Cancer Organism annotate affydata vsn AnnBuilder globaltest GO vsn
updated 17.4 years ago by ▴ 190 • written 17.4 years ago by ★ 2.9k
0
votes
8
replies
1.8k
views
mouse SNPs
SNP Annotation GO HapMap annotate SNP Annotation GO HapMap annotate
13.6 years ago Glazko, Galina ▴ 350
0
votes
8
replies
1.7k
views
Can't find Ly76 on my Affymetrix MoGene 2.0ST array annotated with pd.mogene.2.0.st package
pd.mogene.2.0.st mogene20sttranscriptcluster.db annotate
updated 6.7 years ago by 65k • written 6.7 years ago by • 0
1
vote
8
replies
3.7k
views
GRanges apply functions
GO annotate GO annotate
updated 9.8 years ago by ★ 4.2k • written 9.8 years ago by ▴ 380
0
votes
8
replies
1.6k
views
oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 17.2 years ago by ★ 7.4k • written 17.2 years ago by ★ 2.2k
0
votes
8
replies
1.1k
views
fail to annotate chromosome data to single cell object
error SingleCell annotate
updated 5 months ago by • 0 • written 13 months ago by • 0
0
votes
7
replies
1.7k
views
problem with GOstats, developmental version?
GO Survival hgu95av2 annotate affy affydata graph Rgraphviz limma gcrma matchprobes GO
updated 16.6 years ago by ★ 7.4k • written 16.6 years ago by ★ 2.2k
0
votes
7
replies
1.9k
views
ChIPpeakAnno::getEnrichedGo crashes but I don't know why
annotate ChIPpeakAnno annotate ChIPpeakAnno
updated 13.3 years ago by ★ 4.3k • written 13.3 years ago by ▴ 40
0
votes
7
replies
1.7k
views
AnnBuilder questions...
Annotation annotate AnnBuilder Annotation annotate AnnBuilder
19.1 years ago Dipl.-Ing. Johannes Rainer ▴ 430
0
votes
7
replies
1.7k
views
annaffy annotation problem (hgu133plus2)
Annotation hgu133plus2 probe annotate AnnBuilder Annotation hgu133plus2 probe annotate
updated 19.0 years ago by ▴ 170 • written 19.0 years ago by ▴ 430
0
votes
7
replies
1.2k
views
Changes in annotations?
Annotation hgu133plus2 Biobase annotate Annotation hgu133plus2 Biobase annotate
14.8 years ago Alex Sanchez ▴ 90
0
votes
7
replies
1.7k
views
Fwd: GO terms: Annotation for HumanMethylation450
Annotation Pathways GO probe annotate Annotation Pathways GO probe annotate
11.0 years ago Jinyan Huang ▴ 110
3
votes
6
replies
2.6k
views
RSQLite::dbGetPreparedQuery() is deprecated in AnnotationForge
annotation microarray annotate annotationforge
7.2 years ago MOD • 0
0
votes
6
replies
1.7k
views
annotation package for platform GPL2890
Annotation annotate codelink Annotation annotate codelink
updated 12.6 years ago by ▴ 150 • written 12.6 years ago by ▴ 380
0
votes
6
replies
1.6k
views
GOstats and custom annotation problem
Annotation GO annotate genefilter graph AnnBuilder RBGL GOstats Category Annotation GO
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 310
0
votes
6
replies
2.2k
views
Missing as.list generic from AnnotationDbi?
annotate AnnotationDbi annotate AnnotationDbi
updated 9.6 years ago by ★ 2.0k • written 10.8 years ago by ★ 7.9k
0
votes
6
replies
1.5k
views
ANN: Bioconductor Release 1.7 is available
aCGH Microarray Annotation Classification annotate edd hexbin SAGElyzer Rgraphviz RMAGEML
updated 18.5 years ago by ▴ 190 • written 18.5 years ago by ★ 7.4k
0
votes
6
replies
1.4k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ★ 1.4k
0
votes
5
replies
1.2k
views
BMP4 probe '1940386' missing in illuminaHumanv2BeadID.db (as compared to illuminaHumanv2ProbeID.db)
Cancer annotate Cancer annotate
updated 15.5 years ago by ★ 7.2k • written 15.5 years ago by ▴ 140
0
votes
5
replies
1.7k
views
annotate incompatible with RdbiPgSQL !?!
annotate geneplotter Rdbi RdbiPgSQL annotate geneplotter Rdbi RdbiPgSQL
updated 15.0 years ago by 65k • written 15.0 years ago by ▴ 160
0
votes
5
replies
974
views
Question about ChIPpeakAnno
annotate annotate
11.9 years ago Julie Zhu ★ 4.3k
0
votes
5
replies
1.4k
views
Manufacturer ids in lumiHumanV1
Annotation lumiHumanV1 annotate lumi Annotation lumiHumanV1 annotate lumi
updated 16.8 years ago by ★ 1.2k • written 16.8 years ago by ▴ 830
6
votes
5
replies
14k
views
Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 7.3 years ago by 25k • written 7.3 years ago by ▴ 10
0
votes
5
replies
1.6k
views
topTable (fit) annotation
GO annotate limma GO annotate limma
updated 12.6 years ago by 21k • written 12.6 years ago by ▴ 380
0
votes
5
replies
4.3k
views
annotating microarray data with mogene10stv1
Microarray Annotation annotate limma ASSIGN Microarray Annotation annotate limma ASSIGN
updated 9.7 years ago by 65k • written 9.8 years ago by ▴ 70
0
votes
5
replies
2.6k
views
Issues about how to filter and annotate the MoGene-2_0-st and MoEx-1_0-st-v1 array probe sets
Annotation probe annotate annaffy oligo ReportingTools Annotation probe annotate annaffy
updated 9.8 years ago by ▴ 160 • written 9.9 years ago by 65k
0
votes
5
replies
1.7k
views
Rgraphviz problem
annotate graph Rgraphviz annotate graph Rgraphviz
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ▴ 450
3
votes
5
replies
5.0k
views
getBM returns shorter vectors than values
annotate biomaRt oligo annotate biomaRt oligo
updated 10.6 years ago by ▴ 540 • written 10.6 years ago by ▴ 380
0
votes
5
replies
1.1k
views
chromosome ordering in cPlot()/cColor()
annotate annotate
updated 14.7 years ago by 25k • written 14.7 years ago by ★ 1.0k
0
votes
5
replies
1.6k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 17.4 years ago by ▴ 20 • written 17.5 years ago by ★ 2.2k
0
votes
5
replies
1.5k
views
multiple annotations with get()?
Biobase annotate convert Biobase annotate convert
updated 10.5 years ago by 21k • written 10.5 years ago by ▴ 230
0
votes
5
replies
1.5k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 890
0
votes
5
replies
1.6k
views
oligo package
Microarray Annotation annotate PROcess Microarray Annotation annotate PROcess
updated 11.4 years ago by 65k • written 11.4 years ago by ★ 13k
0
votes
5
replies
1.1k
views
Recent changes to Bioconductor packages
SAGE annotate geneplotter graph SAGElyzer Rdbi SAGE annotate geneplotter graph SAGElyzer
21.2 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
5
replies
1.6k
views
getBioC v1.2.22 & [R] v1.6.2
annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets reposTools affy vsn
updated 21.1 years ago by ★ 3.9k • written 21.1 years ago by ▴ 70
0
votes
4
replies
1.3k
views
error in function reduce from girafe
Annotation annotate biomaRt IRanges girafe Annotation annotate biomaRt IRanges girafe
updated 13.8 years ago by ▴ 450 • written 13.8 years ago by ▴ 810
0
votes
4
replies
1.5k
views
CDF issue
Annotation Cancer cdf annotate affy Annotation Cancer cdf annotate affy
15.5 years ago Mathe, Ewy NIH/NCI [F] ▴ 40
0
votes
4
replies
2.1k
views
BSgenomes vs ENSEMBL
Transcription Annotation BSgenome annotate Biostrings BSgenome Transcription Annotation
updated 15.5 years ago by 16k • written 15.5 years ago by ★ 3.9k
0
votes
4
replies
1.2k
views
Course material for "Using Bioconductor for ChIP-seq experiments"
Sequencing Cancer BSgenome annotate Biostrings BSgenome Sequencing Cancer BSgenome
updated 15.4 years ago by ▴ 10 • written 15.4 years ago by ★ 1.6k
0
votes
4
replies
1.0k
views
missing AnnBuilder parser
Annotation Organism annotate AnnBuilder Annotation Organism annotate AnnBuilder
updated 19.0 years ago by ★ 2.9k • written 19.0 years ago by ★ 1.3k
0
votes
4
replies
2.2k
views
Installing beadarray
annotate geneplotter beadarray AnnotationDbi annotate geneplotter beadarray AnnotationDbi
updated 16.5 years ago by 21k • written 16.5 years ago by ▴ 270
0
votes
4
replies
2.1k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 16.6 years ago by ▴ 500 • written 16.6 years ago by ★ 1.4k
0
votes
4
replies
1.4k
views
Anyone have a GO slim list for Affy HG-U133A or HG-U133Av2?
Annotation GO annotate affy PROcess Category cycle Annotation GO annotate affy PROcess
updated 19.2 years ago by ▴ 310 • written 19.2 years ago by ▴ 250
0
votes
4
replies
1.1k
views
annotate htmlpage error
annotate annotate
12.1 years ago Georg Otto ▴ 120
0
votes
4
replies
2.2k
views
smoothScatter axis limits
annotate geneplotter annotate geneplotter
updated 16.9 years ago by ★ 1.9k • written 16.9 years ago by ▴ 250
50 results • Page 1 of 1
Recent ...
Replies
Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures by Gordon Smyth 50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
Comment: Single-Cell Data Simulation from Bulk RNA-seq by wichaidi • 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
Awards • All
Popular Question to paria.alipour • 0
Popular Question to Eman • 0
Popular Question to James W. MacDonald 65k
Scholar to nhaus ▴ 30
Popular Question to shepherl 3.8k
Locations • All
Hong Kong, 3 minutes ago
WEHI, Melbourne, Australia, 15 minutes ago
Macao, 18 minutes ago
France, 21 minutes ago
China, 28 minutes ago
Traffic: 488 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6