Bioconductor Annotation

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303

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 13 days ago by Tim Peters ▴ 170 • written 21 days ago by s.malik • 0

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186

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clusterProfiler annotation gseGO gsea OrgDb

updated 4 weeks ago by Guido Hooiveld ★ 3.9k • written 4 weeks ago by enee ▴ 10

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148

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ChIPSeq annotation ChIPpeakAnno

10 weeks ago nilanjanamani88 • 0

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2.0k

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Annotation affy oligo ffpe Annotation affy oligo ffpe

written 10.3 years ago by Guest User ★ 13k

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4.2k

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annotation

written 8.8 years ago by seeker • 0

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439

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Annotation annotate DifferentialMethylation minfiDataEPIC

updated 7 months ago by Basti ▴ 780 • written 7 months ago by titangerd • 0

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364

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db0 release Annotation

7 months ago kayla.interdonato ▴ 160

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3.3k

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Bioconductor Annotation Ann

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by Aytaç • 0

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648

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MicroRNAArrayData GSE97562 pd.hugene.1.0.st.v1 Annotation

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by rodj5201 • 0

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910

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Annotation biomaRt

11 months ago • updated 10 months ago RuBBiT0 ▴ 10

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693

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IlluminaHumanMethylationEPICmanifest ChAMP annotation

updated 11 months ago by James W. MacDonald 65k • written 11 months ago by Matilda • 0

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1.1k

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Annotation

11 months ago Michael Steinbaugh ▴ 90

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949

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Annotation biomaRt ensembldb

written 2.4 years ago by Lillian • 0

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2.0k

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ChIPQC annotation rn6

updated 3 months ago by Raghavaram • 0 • written 3.6 years ago by Frédéric Crémazy • 0

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1.6k

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software error annotation

written 4.1 years ago by alan.g.hudson • 0

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1.4k

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Annotation pathview Annotation pathview

written 9.7 years ago by Luo Weijun ★ 1.6k

16 results • Page 1 of 1

Recent ...

Replies

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k

Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …

Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Votes

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

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