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annotation
•
reset
5
votes
11
replies
4.1k
views
How to annotate gene names for genomic coordinates?
annotation
written 8.8 years ago by
seeker
• 0
2
votes
7
replies
1.9k
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC
annotation
rn6
updated 3 months ago by
Raghavaram
• 0 • written 3.6 years ago by
Frédéric Crémazy
• 0
0
votes
6
replies
293
views
unable to access Annotationhub latest record
DNAMethylation
AnnotationHub
EPICv2manifest
annotation
updated 9 days ago by
Tim Peters
▴ 170 • written 17 days ago by
s.malik
• 0
0
votes
5
replies
2.0k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation
affy
oligo
ffpe
Annotation
affy
oligo
ffpe
written 10.3 years ago by
Guest User
★ 13k
1
vote
4
replies
1.6k
views
Problem installing annotation packages AnnotationDbi & BiocFileCache
software error
annotation
written 4.1 years ago by
alan.g.hudson
• 0
3
votes
4
replies
645
views
Questions Trying to Re-create MicroArray Data (GSE97562) (Fig. 2)
MicroRNAArrayData
GSE97562
pd.hugene.1.0.st.v1
Annotation
updated 9 months ago by
James W. MacDonald
65k • written 9 months ago by
rodj5201
• 0
0
votes
4
replies
1.1k
views
BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
11 months ago
Michael Steinbaugh
▴ 90
2
votes
4
replies
904
views
Use with_go along with other filters in getBM function
Annotation
biomaRt
11 months ago • updated 10 months ago
RuBBiT0
▴ 10
0
votes
2
replies
681
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest
ChAMP
annotation
updated 11 months ago by
James W. MacDonald
65k • written 11 months ago by
Matilda
• 0
0
votes
1
reply
1.4k
views
Doubts regarding Pathview
Annotation
pathview
Annotation
pathview
written 9.7 years ago by
Luo Weijun
★ 1.6k
0
votes
1
reply
942
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation
biomaRt
ensembldb
written 2.4 years ago by
Lillian
• 0
0
votes
1
reply
434
views
Create design matrix for differential methylation analysis
Annotation
annotate
DifferentialMethylation
minfiDataEPIC
updated 6 months ago by
Basti
▴ 770 • written 6 months ago by
titangerd
• 0
2
votes
1
reply
177
views
Only positive enrichment score in GSEA
clusterProfiler
annotation
gseGO
gsea
OrgDb
updated 26 days ago by
Guido Hooiveld
★ 3.9k • written 28 days ago by
enee
▴ 10
0
votes
1
reply
3.3k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
Aytaç
• 0
1
vote
0
replies
360
views
News:
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0
release
Annotation
7 months ago
kayla.interdonato
▴ 160
0
votes
0
replies
140
views
Best method for annotating distal peaks
ChIPSeq
annotation
ChIPpeakAnno
10 weeks ago
nilanjanamani88
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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