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Showing :
annotation
•
reset
5
votes
11
replies
4.2k
views
How to annotate gene names for genomic coordinates?
annotation
written 8.8 years ago by
seeker
• 0
3
votes
4
replies
651
views
Questions Trying to Re-create MicroArray Data (GSE97562) (Fig. 2)
MicroRNAArrayData
GSE97562
pd.hugene.1.0.st.v1
Annotation
updated 9 months ago by
James W. MacDonald
65k • written 9 months ago by
rodj5201
• 0
2
votes
1
reply
186
views
Only positive enrichment score in GSEA
clusterProfiler
annotation
gseGO
gsea
OrgDb
updated 4 weeks ago by
Guido Hooiveld
★ 3.9k • written 4 weeks ago by
enee
▴ 10
2
votes
7
replies
2.0k
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC
annotation
rn6
updated 4 months ago by
Raghavaram
• 0 • written 3.6 years ago by
Frédéric Crémazy
• 0
2
votes
4
replies
913
views
Use with_go along with other filters in getBM function
Annotation
biomaRt
11 months ago • updated 10 months ago
RuBBiT0
▴ 10
1
vote
0
replies
365
views
News:
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0
release
Annotation
7 months ago
kayla.interdonato
▴ 160
1
vote
4
replies
1.6k
views
Problem installing annotation packages AnnotationDbi & BiocFileCache
software error
annotation
written 4.1 years ago by
alan.g.hudson
• 0
0
votes
2
replies
694
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest
ChAMP
annotation
updated 11 months ago by
James W. MacDonald
65k • written 11 months ago by
Matilda
• 0
0
votes
0
replies
149
views
Best method for annotating distal peaks
ChIPSeq
annotation
ChIPpeakAnno
11 weeks ago
nilanjanamani88
• 0
0
votes
6
replies
306
views
unable to access Annotationhub latest record
DNAMethylation
AnnotationHub
EPICv2manifest
annotation
updated 14 days ago by
Tim Peters
▴ 170 • written 22 days ago by
s.malik
• 0
0
votes
5
replies
2.0k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation
affy
oligo
ffpe
Annotation
affy
oligo
ffpe
written 10.3 years ago by
Guest User
★ 13k
0
votes
1
reply
1.4k
views
Doubts regarding Pathview
Annotation
pathview
Annotation
pathview
written 9.7 years ago by
Luo Weijun
★ 1.6k
0
votes
1
reply
441
views
Create design matrix for differential methylation analysis
Annotation
annotate
DifferentialMethylation
minfiDataEPIC
updated 7 months ago by
Basti
▴ 780 • written 7 months ago by
titangerd
• 0
0
votes
1
reply
3.4k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
Aytaç
• 0
0
votes
4
replies
1.1k
views
BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
11 months ago
Michael Steinbaugh
▴ 90
0
votes
1
reply
949
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation
biomaRt
ensembldb
written 2.4 years ago by
Lillian
• 0
16 results • Page
1 of 1
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Replies
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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