Showing : annotation • reset
0
votes
11
replies
1.9k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
VariantAnnotation Annotation VariantAnnotation VariantTools VariantAnnotation Annotation
updated 10.4 years ago by ★ 6.8k • written 10.4 years ago by ★ 1.7k
2
votes
12
replies
2.3k
views
ann_objs$MAPCOUNTS <- AnnotationDbi:::createMAPCOUNTS(dbconn, prefix) does not work well
annotation orgdb
8.2 years ago knishida ▴ 20
0
votes
8
replies
1.6k
views
GOstats error messages
Annotation rat2302 Annotation rat2302
18.6 years ago Kimpel, Mark W ▴ 890
0
votes
6
replies
1.4k
views
AnnBuilder and Diverse Mappings
Annotation GO AnnBuilder Annotation GO AnnBuilder
updated 17.2 years ago by ▴ 870 • written 17.2 years ago by ▴ 130
0
votes
10
replies
2.4k
views
assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray Annotation GO Network Regression Survival Infrastructure Escherichia coli ROC
11.1 years ago Julie Zhu ★ 4.3k
0
votes
10
replies
2.8k
views
gene set enrichment
Annotation Organism Annotation Organism
updated 2.1 years ago by 50k • written 11.4 years ago by ▴ 220
0
votes
7
replies
1.4k
views
[Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function
Annotation GO BSgenome BSgenome ChIPpeakAnno Annotation GO BSgenome BSgenome ChIPpeakAnno
updated 14.1 years ago by ▴ 310 • written 14.1 years ago by ★ 4.3k
0
votes
10
replies
1.7k
views
AnnBuilder doesn't work on gene information ("GENENAME", "SYMBOL", etc)
Microarray Annotation probe annotate affy AnnBuilder Microarray Annotation probe annotate
updated 17.8 years ago by ★ 2.9k • written 17.8 years ago by ★ 1.6k
0
votes
10
replies
1.9k
views
comparing GO lists
Annotation GO Cancer graph GOstats Annotation GO Cancer graph GOstats
updated 16.7 years ago by ▴ 130 • written 16.7 years ago by ★ 5.5k
7
votes
8
replies
2.0k
views
Microarray analysis using RMA method using affy, limma
microarray annotation aureus affy
6.2 years ago neranjan007 • 0
0
votes
5
replies
1.7k
views
Annotation package built with pdInfoBuilder cannot be installed
annotation pdinfobuilder
9.1 years ago alakatos ▴ 130
0
votes
8
replies
2.1k
views
How to use the QUIDE-seq R/python package to remove non-genomic DNA sequences?
annotation software software error
updated 7.8 years ago by ★ 4.3k • written 7.9 years ago by ▴ 10
2
votes
14
replies
3.5k
views
Annotation of Affy Porcine Gene 1.0 ST array data
limma oligo annotation
updated 9.1 years ago by ▴ 130 • written 9.3 years ago by • 0
0
votes
5
replies
1.6k
views
Measuring similarities beween GO terms graphs
Annotation GO GOstats Annotation GO GOstats
updated 16.7 years ago by ▴ 50 • written 16.7 years ago by ▴ 500
0
votes
5
replies
1.3k
views
AnnBuilder package
Annotation Annotation
updated 22.1 years ago by ★ 2.9k • written 22.1 years ago by ▴ 530
0
votes
8
replies
1.5k
views
Help with HyperGTest
Annotation probe GOstats Annotation probe GOstats
14.5 years ago Yue, Chen - BMD ▴ 60
0
votes
7
replies
2.2k
views
Limma: questions about data pre-processing
Annotation limma Annotation limma
12.2 years ago Vladimir Krasikov ▴ 90
0
votes
5
replies
3.6k
views
How to import data to R
annotation
updated 8.2 years ago by ▴ 130 • written 8.2 years ago by • 0
0
votes
7
replies
1.7k
views
annaffy annotation problem (hgu133plus2)
Annotation hgu133plus2 probe annotate AnnBuilder Annotation hgu133plus2 probe annotate
updated 19.1 years ago by ▴ 170 • written 19.1 years ago by ▴ 430
0
votes
6
replies
1.4k
views
can't instal MetaData package "mouse4302"
Annotation mouse4302 Annotation mouse4302
updated 19.1 years ago by ★ 7.4k • written 19.2 years ago by 50k
1
vote
15
replies
3.4k
views
reactome.db: reactome IDs not mapped to pathway names
annotation pathways
updated 9.1 years ago by ▴ 150 • written 9.5 years ago by ★ 2.0k
0
votes
6
replies
1.4k
views
Getting GO terms and other annotation for Golub data set
Annotation Pathways GO Annotation Pathways GO
19.2 years ago michael watson IAH-C ★ 3.4k
0
votes
9
replies
1.7k
views
metadata - annotation package changes
Annotation moe430a probe Annotation moe430a probe
updated 18.7 years ago by ★ 2.9k • written 18.7 years ago by ▴ 160
0
votes
7
replies
1.4k
views
athPkgBuilder data source :missing probesets
Annotation Annotation
written 17.7 years ago by ▴ 870
0
votes
4
replies
1.3k
views
Annotation data package is not being created
Annotation Organism PROcess Annotation Organism PROcess
updated 20.4 years ago by ★ 2.9k • written 20.4 years ago by ▴ 70
0
votes
5
replies
1.3k
views
Annotation of Affymetrix hgu133plus2 chip
Annotation hgu133plus2 probe Annotation hgu133plus2 probe
updated 19.7 years ago by ★ 5.5k • written 19.7 years ago by ▴ 430
0
votes
5
replies
2.0k
views
Error during makeOrgPackageFromNCBI
annotation annotationforge annotationdbi makeorgpackagefromncbi
9.3 years ago • updated 9.2 years ago oliver.tills • 0
0
votes
5
replies
2.3k
views
easyRNAseq annotation file
easyrnaseq annotation
8.6 years ago kylvalda • 0
0
votes
5
replies
1.7k
views
Rsubread - featureCounts for extracting read counts from De novo assembled transcripts - EdgeR DE analysis
Annotation GO BSgenome cdf BSgenome Rsubread Annotation GO BSgenome cdf BSgenome
10.7 years ago Alan Smith ▴ 150
0
votes
4
replies
1.0k
views
problems with multtest
Annotation multtest Annotation multtest
updated 20.2 years ago by 65k • written 20.2 years ago by ★ 3.4k
0
votes
4
replies
1.7k
views
easyRNASeq error
Sequencing Alignment Annotation Organism BSgenome biomaRt BSgenome easyRNASeq Sequencing
12.2 years ago • updated 12.1 years ago delhomme@embl.de ★ 1.2k
0
votes
4
replies
2.4k
views
Illumina Sentrix HumanRef-8 Expression BeadChip annotation file
illumina annotation
updated 8.5 years ago by ★ 6.5k • written 8.5 years ago by ▴ 10
0
votes
5
replies
2.0k
views
downloading different kinds of microarray data
Sequencing Microarray Genetics Annotation gpls convert GEOquery GEOmetadb Sequencing gpls
updated 13.7 years ago by ▴ 30 • written 13.7 years ago by 21k
0
votes
6
replies
1.5k
views
Illumina data and GO2heatmap
Annotation lumi Annotation lumi
updated 13.9 years ago by ▴ 480 • written 13.9 years ago by ▴ 70
0
votes
4
replies
1.3k
views
about ChIPpeakAnno
Annotation ChIPpeakAnno Annotation ChIPpeakAnno
13.6 years ago Julie Zhu ★ 4.3k
0
votes
8
replies
1.6k
views
ChIPpeakAnno Strandedness and distance calculation
Annotation Cancer ChIPpeakAnno Annotation Cancer ChIPpeakAnno
updated 14.0 years ago by ★ 1.5k • written 14.0 years ago by ★ 4.3k
0
votes
4
replies
1.2k
views
rae230a/b data packages buggy?
Annotation rae230a rae230b affy annaffy Annotation rae230a rae230b affy annaffy
updated 20.7 years ago by ★ 2.9k • written 20.7 years ago by ▴ 110
0
votes
4
replies
904
views
Recent changes to Bioconductor packages
Annotation Annotation
20.7 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
6
replies
1.1k
views
selfmade annnotation package
Annotation Annotation
updated 14.7 years ago by 65k • written 14.7 years ago by ▴ 60
0
votes
4
replies
1.1k
views
Recent changes to Bioconductor packages
Annotation GO Biobase Annotation GO Biobase
20.5 years ago • updated 20.4 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
7
replies
1.9k
views
ragene10st
Annotation GO Rattus norvegicus ChipName cdf probe affy AnnotationDbi AffyCompatible GO
updated 15.1 years ago by ▴ 630 • written 15.1 years ago by ▴ 370
0
votes
3
replies
1.7k
views
illumina annotation packages vs. bgx manifests
Annotation illuminaRatv1 lumiRatV1 probe Annotation illuminaRatv1 lumiRatV1 probe
updated 15.8 years ago by ★ 1.2k • written 15.8 years ago by ▴ 60
0
votes
7
replies
1.7k
views
AnnBuilder questions...
Annotation annotate AnnBuilder Annotation annotate AnnBuilder
19.1 years ago Dipl.-Ing. Johannes Rainer ▴ 430
0
votes
4
replies
1.2k
views
Gostats with Yeast annotation
Annotation GO Yeast GOstats Annotation GO Yeast GOstats
updated 15.8 years ago by ★ 7.2k • written 15.8 years ago by ▴ 650
0
votes
3
replies
1.1k
views
Converting annotate lists to a matrix
Annotation hu6800 convert Annotation hu6800 convert
19.2 years ago michael watson IAH-C ★ 3.4k
0
votes
5
replies
2.6k
views
Issues about how to filter and annotate the MoGene-2_0-st and MoEx-1_0-st-v1 array probe sets
Annotation probe annotate annaffy oligo ReportingTools Annotation probe annotate annaffy
updated 9.8 years ago by ▴ 160 • written 9.9 years ago by 65k
0
votes
3
replies
3.3k
views
from RefSeq to GO terms / gene symbol to geneID
Proteomics Coverage Annotation GO Proteomics Coverage Annotation GO
16.9 years ago • updated 16.8 years ago Simon Lin ▴ 270
0
votes
4
replies
1.3k
views
Problems with hgu133plus2
Annotation hgu133plus2 Annotation hgu133plus2
19.2 years ago Vitalina Komashko ▴ 30
0
votes
5
replies
1.6k
views
AnnBuilder with custmerized GO annotation
Annotation GO GOstats Annotation GO GOstats
updated 17.0 years ago by ▴ 870 • written 17.0 years ago by ▴ 120
0
votes
8
replies
1.6k
views
annotation files for agilent: a bit off-topic
Annotation CGH Annotation CGH
updated 16.8 years ago by ▴ 100 • written 16.8 years ago by ★ 1.2k
50 results • Page 1 of 1
Recent ...
Replies
Comment: Methylation Analysis experiment design using Limma by hortense96 • 0
Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…
Comment: Limma design with continuous and categorical covariates by hortense96 • 0
Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …
Answer: minfi::read.metharray.exp by Basti ▴ 770
Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…
Comment: DESeq2 - dispersion estimation when there is none by WardDeb • 0
Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0
Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …
Votes
Answer: OrgDb for maize
Answer: DESeq2 - dispersion estimation when there is none
Comment: Cannabis and KEGGgraph
Comment: Cannabis and KEGGgraph
Answer: Cannabis and KEGGgraph
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