Showing : annotation • reset
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1.6k
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Error in virtualArray Please help
Annotation Preprocessing Annotation Preprocessing
11.9 years ago Manvendra.Singh@mdc-berlin.de ▴ 20
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1
reply
1.4k
views
Oryza sativa problem
Annotation convert Annotation convert
updated 11.9 years ago by ▴ 320 • written 11.9 years ago by ★ 13k
0
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1
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3.1k
views
annotation package for HuEx-1_0-st-v1 platform instead of pd.huex.1.0.st.v1
Microarray Annotation hgu133a hgu133plus2 cdf Microarray Annotation hgu133a hgu133plus2
updated 11.9 years ago by ★ 3.9k • written 11.9 years ago by ▴ 10
0
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2.3k
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Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO
11.9 years ago Hervé Pagès 16k
0
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833
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What software packages for Affymetrix HTA_2.0
Annotation probe Annotation probe
11.9 years ago Guest User ★ 13k
0
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2
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2.3k
views
HGNC annotation for use in GOstats
Annotation GOstats Annotation GOstats
updated 11.9 years ago by 68k • written 11.9 years ago by ▴ 200
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11
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2.9k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
VariantAnnotation Annotation VariantAnnotation VariantTools VariantAnnotation Annotation
updated 11.9 years ago by ★ 6.8k • written 11.9 years ago by ★ 1.7k
0
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2
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2.5k
views
minfi release 1.8
SNP Annotation minfi bumphunter SNP Annotation minfi bumphunter
updated 11.9 years ago by ★ 6.5k • written 11.9 years ago by ▴ 30
0
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1
reply
2.7k
views
Meta data for gene from GEO
Annotation gpls GEOquery GEOmetadb Annotation gpls GEOquery GEOmetadb
updated 11.9 years ago by 21k • written 12.0 years ago by ▴ 200
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5
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1.9k
views
Query on ChipPeakAnno: AnnotatePeakinBatch input
Annotation Cancer ChIPpeakAnno Annotation Cancer ChIPpeakAnno
updated 11.9 years ago by ▴ 30 • written 11.9 years ago by ★ 4.3k
0
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1
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1.7k
views
easyRNASeq packages: overlapping exons warning unsolved (?) and use of paired end information
Coverage Annotation GO Cancer Organism edgeR DESeq GenomicRanges Rsubread easyRNASeq GO
updated 12.0 years ago by ▴ 320 • written 12.0 years ago by 53k
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0
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2.1k
views
Fw: Meta data for gene from GEO
Annotation gpls GEOquery GEOmetadb Annotation gpls GEOquery GEOmetadb
12.0 years ago rohan bareja ▴ 200
0
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1
reply
2.3k
views
Analysis of Affymetrix Human Gene 2.0 ST arrays
Transcription Annotation Normalization GO hgu133plus2 affy PROcess Category Transcription
updated 12.0 years ago by ▴ 80 • written 12.0 years ago by ▴ 20
0
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0
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1.5k
views
easyRNASeq packages: overlapping exons warning unsolved (?) and use of paired end information
Coverage Annotation GO Cancer Organism edgeR DESeq GenomicRanges easyRNASeq Coverage GO
12.0 years ago Nicolas Delhomme ▴ 320
0
votes
4
replies
4.4k
views
Analysis of Affymetrix Human Gene 2.0 ST arrays
Annotation Normalization hgu133plus2 affy PROcess Category Annotation Normalization affy
updated 12.0 years ago by 68k • written 12.0 years ago by ★ 13k
0
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0
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1.6k
views
zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
VariantAnnotation Annotation PolyPhen SIFT annotate VariantAnnotation ensemblVEP Annotation
12.0 years ago Valerie Obenchain ★ 6.8k
0
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3
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2.4k
views
autoplot() error on a GRanges object in ggbio 1.10.8
Annotation TranscriptDb Annotation TranscriptDb
updated 12.0 years ago by ▴ 490 • written 12.0 years ago by ★ 1.1k
0
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1
reply
1.5k
views
inconsistency in illuminaHumanv4.db?
Annotation Annotation
updated 12.0 years ago by ★ 1.1k • written 12.0 years ago by ▴ 130
0
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1
reply
2.5k
views
Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
updated 12.0 years ago by ★ 4.3k • written 12.0 years ago by ▴ 290
0
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4
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1.9k
views
retrieving annotation
Annotation biomaRt GenomicFeatures Annotation biomaRt GenomicFeatures
updated 12.0 years ago by 16k • written 12.0 years ago by ▴ 110
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1
reply
1.8k
views
minfi release 1.8
SNP Annotation minfi bumphunter SNP Annotation minfi bumphunter
updated 12.0 years ago by ▴ 30 • written 12.0 years ago by ★ 6.5k
0
votes
7
replies
3.5k
views
GTF file error when using easyRNAseq�
Annotation Organism BSgenome BSgenome DESeq easyRNASeq Annotation Organism BSgenome DESeq
updated 12.0 years ago by ★ 1.2k • written 12.0 years ago by ★ 13k
0
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1
reply
1.0k
views
stranded intronic variants with VariantAnnotation::locateVariants()
Annotation Annotation
updated 12.0 years ago by ★ 3.4k • written 12.0 years ago by ★ 6.8k
0
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3
replies
2.1k
views
help with SCAN.UPC and u133aaofav2
Annotation Annotation
updated 12.0 years ago by ▴ 600 • written 12.0 years ago by ▴ 360
0
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3
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3.9k
views
Working with ensembl 73 & BSGenome
Annotation BSgenome TranscriptDb biomaRt BSgenome Annotation BSgenome TranscriptDb biomaRt
updated 12.0 years ago by 16k • written 12.0 years ago by ★ 13k
0
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4
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3.6k
views
450k annotation packages compatible version and analysis with blockFinder (minfi)
Annotation Clustering convert minfi Annotation Clustering convert minfi
updated 12.1 years ago by ★ 6.5k • written 12.1 years ago by ▴ 50
0
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0
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1.2k
views
Rsubread segfault
Annotation PROcess Rsubread Annotation PROcess Rsubread
12.1 years ago James W. MacDonald 68k
0
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2
replies
1.3k
views
stranded intronic variants with VariantAnnotation::locateVariants()
VariantAnnotation Annotation VariantAnnotation VariantAnnotation Annotation VariantAnnotation
updated 12.1 years ago by ★ 6.8k • written 12.1 years ago by ★ 3.4k
0
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1
reply
2.8k
views
pathview -- ID Problem?
Annotation pathview Annotation pathview
updated 12.1 years ago by ★ 1.6k • written 12.1 years ago by ★ 13k
2
votes
5
replies
5.3k
views
Ensembl or Gencode version of TxDb.Hsapiens.UCSC.hg19.knownGene
Annotation Annotation
updated 12.1 years ago by 68k • written 12.1 years ago by ▴ 220
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2
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3.6k
views
Biobase - Error: ExpressionSet
Microarray Annotation GO ExperimentData Biobase Microarray Annotation GO ExperimentData
updated 12.1 years ago by 1.6k • written 12.1 years ago by ▴ 50
0
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0
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993
views
Illumina spike-in probe sequences, lumi
Annotation probe Annotation probe
12.1 years ago Rohmatul Fajriyah ▴ 190
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2
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1.9k
views
limma_3.17.23 - missing ILMN identifiers in EList objects after read.ilmn
Annotation Normalization GO probe annotate Annotation Normalization GO probe annotate
updated 12.1 years ago by ★ 3.6k • written 12.1 years ago by ▴ 120
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0
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1.2k
views
ChIPpeakAnno Question, regarding BED scores
Annotation annotate ChIPpeakAnno Annotation annotate ChIPpeakAnno
12.1 years ago Julie Zhu ★ 4.3k
0
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1
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1.1k
views
hgug4845a.db - error in the lookUp function when running genes.rpt.agi
Annotation hgug4112a Annotation hgug4112a
updated 12.1 years ago by 68k • written 12.1 years ago by ▴ 10
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911
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation probe Annotation probe
12.1 years ago Nitesh Turaga ▴ 50
1
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1
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2.1k
views
Mapping Affymetrix annotations with Bioconductor annotations
Annotation Organism zebrafish cdf affy AnnotationForge Annotation Organism zebrafish cdf
updated 12.1 years ago by 68k • written 12.1 years ago by ▴ 80
2
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3
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1.6k
views
Creating Annotation package for GPL10427
Annotation hgu95av2 Annotation hgu95av2
updated 12.1 years ago by 68k • written 12.1 years ago by ★ 13k
0
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1
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1.3k
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custom variant AnnotationDbi?
Annotation SNPlocs Annotation SNPlocs
updated 12.1 years ago by 6.7k • written 12.1 years ago by ▴ 380
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0
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1.3k
views
ka
Annotation db0 Annotation db0
12.1 years ago Guest User ★ 13k
0
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0
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1.4k
views
[devteam-bioc] Why does a GOAllFrame contain more rows than its argument GoFrame?
Annotation GO Organism AnnotationDbi Annotation GO Organism AnnotationDbi
12.1 years ago Marc Carlson ★ 7.2k
0
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0
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959
views
CANCELED: Boston Bioconductor Basics, Oct 10-11 2013
Annotation Annotation
12.1 years ago Vincent J. Carey, Jr. 6.7k
0
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0
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943
views
Course offering: Boston Bioconductor Basics, Oct 10-11 2013: Tuition cut for early registration
Annotation Annotation
12.1 years ago Vincent J. Carey, Jr. 6.7k
0
votes
3
replies
1.6k
views
xps library with mouse gene 1.0 transcript arrays
Annotation cdf xps Annotation cdf xps
updated 12.1 years ago by ★ 3.9k • written 12.1 years ago by ★ 1.5k
0
votes
4
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1.8k
views
zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
Annotation PolyPhen SIFT Annotation PolyPhen SIFT
updated 12.1 years ago by ★ 6.8k • written 12.2 years ago by ★ 3.4k
0
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1
reply
1.6k
views
ChIPpeakAnno, getAnnotation question
Annotation zebrafish convert biomaRt ChIPpeakAnno Annotation zebrafish convert biomaRt
updated 12.1 years ago by ★ 4.3k • written 12.2 years ago by ▴ 10
0
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1
reply
1.7k
views
ChIPpeakAnno, getAnnotation question
Annotation GO zebrafish convert biomaRt ChIPpeakAnno Annotation GO zebrafish convert
updated 12.2 years ago by ★ 4.3k • written 12.2 years ago by ★ 13k
0
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1
reply
1.7k
views
eayRNASeq with Ensemble GRCh37 help
Annotation Organism easyRNASeq DESeq2 Annotation Organism easyRNASeq DESeq2
updated 12.2 years ago by ★ 1.2k • written 12.2 years ago by ▴ 10
0
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0
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966
views
Boston Bioconductor Basics, Oct 10-11 2013
Annotation Annotation
12.2 years ago Vincent J. Carey, Jr. 6.7k
0
votes
2
replies
2.0k
views
Pathview with non-KEGG organism
Annotation pathview Annotation pathview
updated 12.2 years ago by ★ 1.6k • written 12.2 years ago by ▴ 150
1,978 results • Page 14 of 40
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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