Bioconductor AnnotationHub

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5.5k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 15 days ago by Shiva • 0 • written 5.4 years ago by Guido Hooiveld ★ 3.9k

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289

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 8 days ago by Tim Peters ▴ 170 • written 16 days ago by s.malik • 0

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311

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 7 weeks ago by Michael Love 41k • written 7 weeks ago by Filipe • 0

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147

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annotatr AnnotationHub

11 weeks ago hayleyw • 0

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4.3k

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AnnotationHub AnnotationForge Pseudomonas_aeruginosa

updated 4 months ago by James W. MacDonald 65k • written 16 months ago by Manmohit ▴ 10

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1.1k

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clusterProfiler Annotationhub

updated 5 months ago by Guido Hooiveld ★ 3.9k • written 5 months ago by BS • 0

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4.5k

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BiocFileCache AnnotationHub ExperimentHub

updated 5 weeks ago by Melissa • 0 • written 5 months ago by shepherl 3.8k

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538

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tximeta AnnotationHub AnnotationHubData

6 months ago Thon • 0

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5.7k

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 5 weeks ago by shepherl 3.8k • written 2.2 years ago by jon.klonowski ▴ 40

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4.9k

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clusterProfiler AnnotationHub GO uniprot

updated 10 weeks ago by Guido Hooiveld ★ 3.9k • written 3.2 years ago by Alberto • 0

10 results • Page 1 of 1

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Answer: Error retrieving ensembl gene id using biomaRt... by Mike Smith ★ 6.5k

I think you have the assignment operator (`<-`) the wrong way round. It should be `df_biomrt_tmp <- getBM(...`

Answer: Error retrieving ensembl gene id using biomaRt... by James W. MacDonald 65k

I can't reproduce. ``` > library(biomaRt) Warning message: package 'biomaRt' was built under R version 4.3.2 > library(org.Hs.eg.db…

Comment: DESeq2 setting significant p-value by Michael Love 41k

``` > counts <- matrix(1:16, ncol=4, dimnames=list(letters[1:4],NULL)) > coldata <- data.frame(x=1:4) > DESeqDataSetFromMatrix(counts, cold…

Comment: DESeq filtering specific to contrasts by Michael Love 41k

Right, I was suggesting subsetting as a valid choice for "treatment and control samples at each timepoint"

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Fair enough, I guess it depends on the comparison being made, right? If one was interested in a feature comparing Timepoint A vs B, then it…

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Install/Switch between multiple versions of R, Rstudio, and Bioconductor

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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