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Showing :
annotationHub
•
reset
6
votes
9
replies
4.1k
views
BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
updated 16 days ago by
Melissa
• 0 • written 5 months ago by
shepherl
3.8k
9
votes
11
replies
5.5k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl
Rstudio
ensembldb
AnnotationHub
ensdb
updated 16 days ago by
shepherl
3.8k • written 2.2 years ago by
jon.klonowski
▴ 40
2
votes
1
reply
283
views
clusterProfiler, AnnotationHub, and discrepancies in GO Terms
Atlanticsalmon
clusterPro
Salmosalar
AnnotationHub
GeneOntology
updated 27 days ago by
Michael Love
41k • written 28 days ago by
Filipe
• 0
7
votes
32
replies
5.1k
views
Ensembl plants at annotationHub?
ensembl
ensembldb
plant
arabidopsis thaliana
annotationhub
updated 5 weeks ago by
Emmi
• 0 • written 5.4 years ago by
Guido Hooiveld
★ 3.9k
3
votes
11
replies
4.7k
views
GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler
AnnotationHub
GO
uniprot
updated 7 weeks ago by
Guido Hooiveld
★ 3.9k • written 3.2 years ago by
Alberto
• 0
0
votes
0
replies
116
views
Annotatr Duplicate Entries
annotatr
AnnotationHub
8 weeks ago
hayleyw
• 0
2
votes
28
replies
4.2k
views
Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and annotation forge
AnnotationHub
AnnotationForge
Pseudomonas_aeruginosa
updated 4 months ago by
James W. MacDonald
65k • written 15 months ago by
Manmohit
▴ 10
3
votes
4
replies
1.1k
views
Annotation hub and clusterProfiler errors
clusterProfiler
Annotationhub
updated 5 months ago by
Guido Hooiveld
★ 3.9k • written 5 months ago by
BS
• 0
1
vote
2
replies
506
views
AnnotationHub data for Mus musculus seems to be missing, while previously it was there
tximeta
AnnotationHub
AnnotationHubData
5 months ago
Thon
• 0
0
votes
1
reply
658
views
multiGSEA package in R not appropriately assigning metabolites to pathways?
metaboliteIDmapping
AnnotationHub
multiGSEA
14 months ago
Thomas
• 0
2
votes
2
replies
715
views
[BigWigFile] import as RLE vs default and length comparaison
BSgenome.Hsapiens.UCSC.hg19
rtracklayer
AnnotationHub
19 months ago • updated 18 months ago
Lenny186
• 0
0
votes
14
replies
4.7k
views
Easy way to turn OrgDb object from AnnotationHub into package?
AnnotationHub
AnnotationDbi
AnnotationForge
pathview
7.2 years ago • updated 19 months ago
Jenny Drnevich
★ 2.0k
0
votes
3
replies
4.0k
views
Convert Agilent Probe ID to gene IDs/Symbols
AnnotationHub
biomaRt
updated 19 months ago by
alvea2008667
• 0 • written 3.0 years ago by
rohitsatyam102
▴ 20
0
votes
3
replies
1.2k
views
Differences in ENSEMBL => ENTREZID mapping coverage between org.Hs.eg.db and AnnotationHub resources
AnnotationHub
org.Hs.eg.db
ensembldb
20 months ago • updated 19 months ago
sandmann.t
▴ 70
9
votes
21
replies
14k
views
ah <- AnnotationHub() Error in UseMethod("filter_"): no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tb…
AnnotationHub
dplyr
updated 20 months ago by
SmallChess
▴ 10 • written 3.4 years ago by
georgia.katsoula
▴ 40
3
votes
6
replies
2.1k
views
How to manage AnnotationHub snapshots / most OrgDB are missing?
AnnotationHub
OrgDb
snapshotDate
updated 20 months ago by
shepherl
3.8k • written 3.9 years ago by
Jenny Drnevich
★ 2.0k
4
votes
8
replies
1.7k
views
Problem converting transcript to genomic coordinates with Annotation Hub
AnnotationHub
2.3 years ago • updated 22 months ago
nattzy94
▴ 20
0
votes
4
replies
1.1k
views
AnnotationHub
AnnotationHub
2.0 years ago
junliqilinpan
• 0
0
votes
2
replies
1.8k
views
AnnotationHub installation ‘Rcpp’ 1.0.6 is already loaded, but >= 1.0.7 is required
AnnotationHub
Install
updated 2.0 years ago by
shepherl
3.8k • written 2.0 years ago by
nhaus
▴ 10
4
votes
6
replies
2.2k
views
OrgDb (org.Hs.eg.db) missing many EntrezIDs and their Symbols (Compared to Ensembl GRChg8 v103)
AnnotationHub
OrganismDbi
org.Hs.eg.db
updated 2.1 years ago by
Gordon Smyth
50k • written 2.1 years ago by
Nathan
• 0
0
votes
2
replies
903
views
AnnotationHub problem
AnnotationHub
2.2 years ago
Jianxuan
• 0
1
vote
3
replies
1.1k
views
How delete the AnnotationHub downloaded datasets
AnnotationHub
updated 2.4 years ago by
Mike Smith
★ 6.5k • written 2.5 years ago by
sabermohammdi.1994
• 0
2
votes
10
replies
2.2k
views
Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter
annotationTools
AnnotationHub
AnnotationData
updated 2.4 years ago by
Guido Hooiveld
★ 3.9k • written 2.4 years ago by
Javan Okendo
• 0
0
votes
0
replies
569
views
LRBaseDbi error
LRBaseDbi
AnnotationHub
2.6 years ago
Francois Marchildon
▴ 20
1
vote
2
replies
1.3k
views
Translating Solanum lycopersum gene IDs to ENTREZIDs for GO enrichment analysis using clusterProfiler
OrgDb
Bioconductor
AnnotationHub
clusterProfiler
updated 2.9 years ago by
Guido Hooiveld
★ 3.9k • written 2.9 years ago by
ju.ry
• 0
0
votes
1
reply
1.0k
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
3.0 years ago
shepherl
3.8k
11
votes
13
replies
3.9k
views
How to retrieve genomic coordinates for a list of entrezID and their respective gene names
genomic
AnnotationHub
GenomicRanges
org.Hs.eg.db
3.3 years ago • updated 3.2 years ago
rohitsatyam102
▴ 20
2
votes
3
replies
1.3k
views
Why No Uniprot information for some other organisms in AnnotationHub?
hub
annotationhub
updated 3.2 years ago by
shepherl
3.8k • written 7.5 years ago by
wssdandan2009
• 0
3
votes
2
replies
1.9k
views
Issue with AnnotationHub
AnnotationHub
3.3 years ago
rahnaman
▴ 10
1
vote
2
replies
1.1k
views
How to mimic biomaRt results with AnnotationHub?
biomaRt
AnnotationHub
3.4 years ago
Ezgi
▴ 60
1
vote
3
replies
959
views
AnnotationHub: failed to load resource name
AnnotationHub
3.6 years ago
ben.ponv
• 0
4
votes
17
replies
2.4k
views
annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt
annotation
Ensembl
annotationHub
updated 3.6 years ago by
Kevin Blighe
★ 3.9k • written 3.6 years ago by
Didi
▴ 10
4
votes
2
replies
1.6k
views
News:
ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
EnsDb
ensembldb
annotation
AnnotationHub
News
3.6 years ago
Johannes Rainer
★ 2.0k
8
votes
16
replies
5.9k
views
Cannot connect to ExperimentHub server
ExperimentHub
AnnotationHub
SingleR
updated 3.6 years ago by
shepherl
3.8k • written 3.6 years ago by
enricoferrero
▴ 660
0
votes
2
replies
1.3k
views
Can't select GO from AnnotationHub orgDB packages
GO.db
AnnotationHub
OrgDB
updated 3.7 years ago by
James W. MacDonald
65k • written 3.7 years ago by
Jenny Drnevich
★ 2.0k
0
votes
3
replies
1.0k
views
extracting the genes associated with a specific pathway
pathway
KEGG
annotation
annotationhub
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
Bogdan
▴ 670
2
votes
8
replies
1.6k
views
gene enrichment using enrichGO function throuth annotationHub orgDb
software error
enrichGO
annotationHub
clusterProfiler
Job
updated 3.9 years ago by
James W. MacDonald
65k • written 3.9 years ago by
bnajafpour
• 0
1
vote
5
replies
1.5k
views
AnnotationHub; Error: failed to load resource; Timeout was reached: [annotationhub.bioconductor.org]
annotationhub
updated 4.0 years ago by
shepherl
3.8k • written 4.0 years ago by
dilaik
• 0
0
votes
2
replies
905
views
hg38 tracks for AnnotationHub
annotationhub
4.1 years ago
Michael Love
41k
0
votes
1
reply
889
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub
Shiny
Rstudio
updated 4.1 years ago by
shepherl
3.8k • written 4.1 years ago by
bwiley4
• 0
0
votes
8
replies
2.6k
views
I can't use AnnotationHub()
AnnotationHub
4.2 years ago
755606975
• 0
1
vote
3
replies
2.2k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub
Ensembl
Mouse
AnnotationHub Ensembl
4.3 years ago
dmgatti
▴ 10
3
votes
0
replies
1.0k
views
News:
EnsDb databases for Ensembl release 98 provide now also transcripts' GC content
annotation
ensembldb
EnsDb
AnnotationHub
News
4.3 years ago
Johannes Rainer
★ 2.0k
2
votes
2
replies
1.2k
views
how to choose annotation file in AnnotationHub web server
annotation
AnnotationHub
4.4 years ago
15958021290
▴ 10
3
votes
4
replies
1.1k
views
Are AH52264, AH66175, and AH70594 duplicates?
AnnotationHub
updated 4.4 years ago by
shepherl
3.8k • written 4.4 years ago by
Aditya
▴ 160
1
vote
3
replies
978
views
Problem with AnnotationHub after crash during first download of metadata
AnnotationHub
updated 4.6 years ago by
shepherl
3.8k • written 4.6 years ago by
konstantinos.bogias
▴ 10
7
votes
44
replies
5.3k
views
OrgDB download failed via AnnotationHub
annotationhub
orgdb
updated 4.7 years ago by
shepherl
3.8k • written 4.8 years ago by
chirag.parsania
• 0
2
votes
0
replies
942
views
News:
ensembl 96 gtfs and fasta twobits have been added to AnnotationHub
annotationdata
annotationhub
ensembl
gtf
2bit
News
updated 4.9 years ago by
nguyenlieuduoc
• 0 • written 4.9 years ago by
shepherl
3.8k
1
vote
4
replies
1.2k
views
AnnotationHub Server denied you to change the given directory
annotation
annotationhub
updated 4.9 years ago by
shepherl
3.8k • written 4.9 years ago by
bastien.ducreux
▴ 10
0
votes
11
replies
1.7k
views
AH134 and other AnnotationHub objects unavailable as "defunct"
AnnotationHub
updated 4.9 years ago by
shepherl
3.8k • written 4.9 years ago by
Robert K. Bradley
▴ 40
50 results • Page
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