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annotationTools
•
reset
0
votes
2
replies
341
views
Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware
SingleCellData
annotationTools
updated 5 months ago by
ATpoint
★ 4.0k • written 5 months ago by
yw24418
• 0
0
votes
1
reply
369
views
Which species does GO.db use
GO.db
annotationTools
updated 9 months ago by
Lluís Revilla Sancho
▴ 730 • written 9 months ago by
youngleel
• 0
0
votes
3
replies
735
views
Error with AnnotationTrack(gene, name = "Gene Model") part 3 in edX advanced bioconductor
annotationTools
updated 18 months ago by
James W. MacDonald
65k • written 18 months ago by
jt.cathey
• 0
0
votes
0
replies
775
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process
annotationTools
AnnotationFilter
Annotation
biomaRt
2.4 years ago
Shane
• 0
2
votes
10
replies
2.3k
views
Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter
annotationTools
AnnotationHub
AnnotationData
updated 2.5 years ago by
Guido Hooiveld
★ 3.9k • written 2.5 years ago by
Javan Okendo
• 0
0
votes
2
replies
1.1k
views
Error log when I use biomaRt getBM
biomaRt
annotationTools
updated 3.2 years ago by
Mike Smith
★ 6.5k • written 3.2 years ago by
niyamurry
• 0
1
vote
3
replies
1.2k
views
Different microarrays annotations provided by toTable and annotateEset functions
microarray
annotation
annotationdbi
affycoretools
annotationtools
updated 6.3 years ago by
James W. MacDonald
65k • written 6.3 years ago by
eleonoregravier
▴ 70
0
votes
4
replies
1.5k
views
Annotation Tools package
probe
annotationTools
probe
annotationTools
updated 14.7 years ago by
Brad Ander
▴ 20 • written 14.7 years ago by
Yingfang Tian
▴ 20
0
votes
1
reply
1.2k
views
Annotation Tools package
GO
mouse430a2
probe
convert
annotationTools
GO
mouse430a2
probe
convert
annotationTools
updated 14.8 years ago by
Alexandre Kuhn
▴ 20 • written 14.8 years ago by
Giusy Della Gatta
▴ 50
0
votes
0
replies
979
views
annotationTools incorrect use of ortholog
annotationTools
annotationTools
15.8 years ago
Nathan.Watson-Haigh@csiro.au
▴ 210
10 results • Page
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Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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