Bioconductor Annotationdbi

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569

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BSgenome.Hsapiens.UCSC.hg19 AnnotationDbi

6 weeks ago Erica • 0

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318

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GeneMapping AnnotationDbi AffymetrixDataTestFiles GeneExpressionSignature org.Hs.eg.db

updated 7 months ago by James W. MacDonald 64k • written 7 months ago by Prachi • 0

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333

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ChipDb AnnotationDbi Annotation

8 months ago • updated 7 months ago ahiser • 0

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517

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AnnotationDbi annotation ChIPseeker

updated 9 months ago by James W. MacDonald 64k • written 9 months ago by L ▴ 50

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807

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org.Hs.eg.db AnnotationDbi

updated 10 months ago by James W. MacDonald 64k • written 10 months ago by harish • 0

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553

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ChipDb AnnotationDbi AnnotationForge

updated 10 months ago by James W. MacDonald 64k • written 10 months ago by ahiser • 0

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1.2k

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AnnotationDbi

updated 3 months ago by James W. MacDonald 64k • written 18 months ago by nhaus • 0

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4.5k

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org.Hs.eg.db AnnotationDbi

updated 9 months ago by John • 0 • written 4.8 years ago by biojun • 0

8 results • Page 1 of 1

Recent ...

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Comment: Result from GSEA for non-model organism not as expected by James W. MacDonald 64k

I asked you in a previous thread to **not add comments to old threads** and instead start a new one. Please follow that advice. It's fine i…

Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and by James W. MacDonald 64k

This is something you should be able to work out on your own. When you get an error, you have to read it and try to figure out what it mean…

Comment: Subtracting INPUT reads from ChIP read counts. by ann-sophie.gironne • 0

Hi Rory! I'm trying to scale my bigwig files so the visualization on IGV matches what the DiffBind analysis results, being that the sample…

Comment: Ensembl down??? by James W. MacDonald 64k

Yup, they seem to be down. What exactly are you trying to do? There may be other options.

Answer: Result from GSEA for non-model organism not as expected by Aastha Kapoor • 0

I have a similar issue, I have transcriptome data of an inhouse sequenced bacterial genome. I made the database for that bacteria using mak…

Votes

Comment: Ensembl down???

Answer: Limma/DESeq2 for unbalanced nested design (paired samples)

Result from GSEA for non-model organism not as expected

Comment: DESeq2 estimateSizeFactors iterate takes too long

Answer: DESeq2 estimateSizeFactors iterate takes too long

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