Bioconductor Annotationdbi

Showing : annotationdbi • reset

votes

replies

1.1k

views

limma AnnotationDbi

updated 7 days ago by James W. MacDonald 67k • written 8 days ago by giulia.gentile ▴ 10

votes

replies

711

views

AnnotationDbi GOstats

5 weeks ago • updated 4 weeks ago GV Yoshikawa • 0

votes

replies

1.6k

views

AnnotationDbi AnnotationHub Annotation AnnotationForge

7 weeks ago KABILAN • 0

votes

223

views

AnnotationDbi Annotation annotation BiologicalQuestion

updated 9 weeks ago by James W. MacDonald 67k • written 9 weeks ago by Olajumoke • 0

votes

replies

221

views

AnnotationDbi AnnotationForge

10 weeks ago KABILAN • 0

votes

replies

670

views

AnnotationHub AnnotationDbi AnnotationForge

4 months ago Anna • 0

votes

replies

1.0k

views

UniProt.ws AnnotationDbi

written 5 months ago by georgii.vdovin • 0

votes

replies

345

views

DeconRNASeq AnnotationDbi org.Hs.eg.db

5 months ago chunglee13 • 0

votes

replies

2.3k

views

AnnotationDbi GO.db

updated 10 months ago by Lluís Revilla Sancho ▴ 760 • written 10 months ago by alexandre.blais ▴ 50

9 results • Page 1 of 1

Recent ...

Replies

Comment: p value is 0, padj is 0 by Michael Love 43k

``` > set.seed(1); t.test(rnorm(200,rep(c(0,80),each=100)) ~ rep(0:1,each=100))$p.value [1] 0 ```

Answer: Cannot install GO.db and org.Hs.eg.db by James W. MacDonald 67k

You might try tracing the namespace loading. ``` Sys.setenv("_R_TRACE_LOADNAMESPACE_"="2") install("org.Hs.eg.db") ``` And see if th…

Answer: p value is 0, padj is 0 by James W. MacDonald 67k

It is quite possible for a very small p-value to remain very small after multiplicity adjustment. I don't know the cutoff for `DESeq2` to r…

Answer: Help using rtracklayer for gene ID extraction by James W. MacDonald 67k

You don't need `rtracklayer` for this (not directly anyway), but instead you need `txdbmaker` which you can use to make a `TxDb` object tha…

Answer: Feature Counts - potential bug with outfile.jcounts by Wei Shi ★ 3.6k

We will further develop the junction quantification module to support the use of user-provided annotation data for annotating detected junc…

Votes

Answer: Feature Counts - potential bug with outfile.jcounts

Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2

Answer: Mapping Between GenBank ID's and Uniprot

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Awards • All

Popular Question to giulia.gentile ▴ 10