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annotationdbi
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5
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13
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1.8k
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Installing annotation package in locally
AnnotationDbi
AnnotationHub
Annotation
AnnotationForge
3 months ago
KABILAN
• 0
5
votes
7
replies
1.4k
views
Mapping Between GenBank ID's and Uniprot
UniProt.ws
AnnotationDbi
written 7 months ago by
georgii.vdovin
• 0
2
votes
3
replies
1.3k
views
How to annotate a limma Elist raw class object with an annotation file
limma
AnnotationDbi
updated 10 weeks ago by
James W. MacDonald
68k • written 10 weeks ago by
giulia.gentile
▴ 10
0
votes
3
replies
840
views
makeOrgPackageFromGAF() error with gene ID "GID"
AnnotationHub
AnnotationDbi
AnnotationForge
6 months ago
Anna
• 0
0
votes
2
replies
775
views
GOstats kegg analysis in wheat - help - none of the objects in the first column are legitimate kegg ids (but they are)
AnnotationDbi
GOstats
3 months ago
GV Yoshikawa
• 0
2
votes
9
replies
716
views
Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) returning drastically different numbers of transcripts
AnnotationDbi
EnsDb.Mmusculus.v79
biomaRt
org.Mm.eg.db
updated 13 days ago by
franknappi14
• 0 • written 5 weeks ago by
Nicholas
• 0
0
votes
0
replies
417
views
Improving Gene Matching for CIBERSORT Deconvolution with Monaco Reference Matrix in Bulk RNA-Seq
DeconRNASeq
AnnotationDbi
org.Hs.eg.db
7 months ago
chunglee13
• 0
0
votes
1
reply
294
views
how do I convert an Ilumn IDREF to a CPG loci
AnnotationDbi
Annotation
annotation
BiologicalQuestion
updated 4 months ago by
James W. MacDonald
68k • written 4 months ago by
Olajumoke
• 0
2
votes
2
replies
292
views
SAS token for Annotation package
AnnotationDbi
AnnotationForge
4 months ago
KABILAN
• 0
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Answer: SingleR with multiple single cell references
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> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies
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ATpoint
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The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads?
by
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52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2?
by
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This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
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