Showing : annotationdbi • reset
0
votes
7
replies
2.2k
views
ragene10st
Annotation GO Rattus norvegicus ChipName cdf probe affy AnnotationDbi AffyCompatible GO
updated 15.9 years ago by ▴ 630 • written 15.9 years ago by ▴ 370
0
votes
5
replies
2.3k
views
Error during makeOrgPackageFromNCBI
annotation annotationforge annotationdbi makeorgpackagefromncbi
10.0 years ago oliver.tills • 0
1
vote
9
replies
2.7k
views
AnnotationDbi: Select - Join order
AnnotationDbi
5.9 years ago faustfrankenstein • 0
2
votes
3
replies
3.0k
views
org.Mm.eg.db mm9 version for ChIPpeakAnno getEnrichedGO function
chippeakanno annotationdbi
updated 7.2 years ago by • 0 • written 9.2 years ago by • 0
5
votes
22
replies
6.0k
views
sqliteSendQuery error in AnnotationForge bioconductor package
bioconductor annotationforge annotationdbi annotation r
updated 8.5 years ago by ★ 1.0k • written 9.9 years ago by • 0
7
votes
11
replies
6.7k
views
Error in sqliteSendQuery(conn, statement): error in statement: no such table: c.probes
edgeR limma annotationhub kegga annotationdbi
updated 8.5 years ago by ▴ 20 • written 8.8 years ago by ▴ 20
2
votes
5
replies
1.7k
views
building a new annotation
Annotation AnnBuilder AnnotationDbi Annotation AnnBuilder AnnotationDbi
updated 15.9 years ago by ★ 7.2k • written 15.9 years ago by ▴ 10
2
votes
3
replies
1.2k
views
How to annotate a limma Elist raw class object with an annotation file
limma AnnotationDbi
updated 5 weeks ago by 67k • written 5 weeks ago by ▴ 10
0
votes
14
replies
5.5k
views
Easy way to turn OrgDb object from AnnotationHub into package?
AnnotationHub AnnotationDbi AnnotationForge pathview
7.9 years ago • updated 2.4 years ago Jenny Drnevich ★ 2.0k
1
vote
4
replies
2.8k
views
biocLite updating problem with Ubuntu 17.10
ubuntu biocgenerics s4vectors IRanges annotationdbi
updated 7.1 years ago by 25k • written 7.1 years ago by • 0
5
votes
7
replies
3.2k
views
Duplicated ENTREZID gene annotations org.Hs.eg.db
ENTREZID SYMBOL AnnotationDbi org.Hs.eg.db
updated 4.0 years ago by 52k • written 4.0 years ago by • 0
5
votes
7
replies
1.2k
views
Mapping Between GenBank ID's and Uniprot
UniProt.ws AnnotationDbi
written 6 months ago by • 0
0
votes
5
replies
1.8k
views
hyperGTest not working on custom annotation package
GOstats AnnotationDbi GO.db
updated 5.9 years ago by 67k • written 5.9 years ago by • 0
5
votes
6
replies
3.1k
views
Is mapId supposed to concatenate multiVals?
annotationdbi ensembldb
updated 7.6 years ago by ★ 2.1k • written 7.7 years ago by ★ 13k
3
votes
5
replies
2.0k
views
Selecting few ids from reactome.db
annotationdbi reactome.db bug
updated 8.1 years ago by 25k • written 8.1 years ago by ▴ 760
0
votes
3
replies
2.2k
views
How to produce a dataframe with unique ENTREZID to use in gage?
gage annotationdbi entrez ensembl
6.9 years ago colaneri ▴ 30
0
votes
2
replies
1.8k
views
Bioconductor Digest, Vol 82, Issue 20
Annotation Pathways affy GOstats Category AnnotationDbi Annotation Pathways affy GOstats
updated 15.1 years ago by ▴ 70 • written 15.1 years ago by ▴ 60
1
vote
2
replies
12k
views
select() gene in db not working although key exists
annotationdbi org.mm.eg.db org.dm.eg.db select
9.8 years ago • updated 9.7 years ago Patrick Schorderet ▴ 20
0
votes
4
replies
2.5k
views
Installing beadarray
annotate geneplotter beadarray AnnotationDbi annotate geneplotter beadarray AnnotationDbi
updated 17.2 years ago by 21k • written 17.2 years ago by ▴ 270
19
votes
6
replies
41k
views
How to map all Ensembl IDs to Gene Symbols- Problem with AnootationDbi
rnaseq annotationdbi
updated 8.3 years ago by ★ 6.8k • written 8.3 years ago by ▴ 70
0
votes
3
replies
4.6k
views
ERROR: dependency 'AnnotationDbi' is not available for package 'GO.db'
bioconductor R go.db annotationdbi dependency
7.9 years ago Sidi.Ma • 0
8
votes
12
replies
4.4k
views
How to create tx2gene data.frame when there's no TxDb object for the organism you are working with.
tximport deseq2 annotationdbi
updated 7.3 years ago by ★ 2.1k • written 7.3 years ago by • 0
0
votes
4
replies
1.3k
views
<N/A> Gene Ontology while using the AnnotationDbi package
go annotation annotationdbi
4.8 years ago CUCIO199 • 0
2
votes
3
replies
2.4k
views
Convert Refseq Protein IDs to UniProt IDs
AnnotationDbi
4.1 years ago sgupt46 ▴ 10
5
votes
3
replies
3.2k
views
Get the latest gene name from Entrez ID
AnnotationDbi org.Hs.eg.db
3.8 years ago sgupt46 ▴ 10
0
votes
2
replies
1.1k
views
Building an annotation data package - not Affymetrix
AnnotationDbi AnnotationDbi
15.5 years ago • updated 15.4 years ago Lavinia Gordon ▴ 480
5
votes
13
replies
1.7k
views
Installing annotation package in locally
AnnotationDbi AnnotationHub Annotation AnnotationForge
12 weeks ago • updated 11 weeks ago KABILAN • 0
5
votes
3
replies
3.1k
views
Gene conversion from SYMBOL to ENTREZ using AnnotationDbi doesn't convert some of the genes
AnnotationDbi org.Hs.eg.db
4.1 years ago Emilia ▴ 40
0
votes
3
replies
1.1k
views
gcrma using deprecated package
probe matchprobes AnnotationDbi probe matchprobes AnnotationDbi
15.4 years ago Rullmann, J.A.C. Ton ▴ 40
0
votes
2
replies
1.6k
views
Help with annotating eset (Affy Arrays)
Biobase annotationdbi affy microarray
9.2 years ago rumroses12 • 0
1
vote
2
replies
4.2k
views
Error attaching org.Hs.eg.db package
annotationdbi annotation organismdb loadnamespace
10.2 years ago milorobertsmith • 0
0
votes
4
replies
3.2k
views
topGO annotations issue
topgo annotationdbi
9.9 years ago willmacnair • 0
0
votes
6
replies
2.5k
views
Missing as.list generic from AnnotationDbi?
annotate AnnotationDbi annotate AnnotationDbi
updated 10.3 years ago by ★ 2.0k • written 11.6 years ago by ★ 7.9k
0
votes
5
replies
1.8k
views
problem with Category package and custom annotationDbi
Annotation Category AnnotationDbi Annotation Category AnnotationDbi
updated 16.2 years ago by ★ 5.5k • written 16.2 years ago by ▴ 830
0
votes
2
replies
1.7k
views
annotationDbi error
AnnotationDbi AnnotationDbi
updated 15.2 years ago by 6.7k • written 15.2 years ago by ▴ 20
0
votes
2
replies
2.2k
views
error in creating custom "org.MeSH.XXX.db" package with MeSHDbi
annotation annotationdbi rsqlite
9.8 years ago Ceca Bojic ▴ 10
0
votes
3
replies
1.3k
views
defining accessors (cols, keys, keytypes, select) for annotation package built with AnnotationForge package
Annotation GO Organism AnnotationDbi Annotation GO Organism AnnotationDbi
11.4 years ago Sashi ▴ 20
0
votes
2
replies
1.5k
views
Can't load the arabidopsis.db annotation package created in AnnotationDbi
Annotation AnnotationDbi Annotation AnnotationDbi
16.2 years ago Groot, Philip de ▴ 630
5
votes
7
replies
1.5k
views
Concatenation of Bimap
AnnotationDbi Concatenate
updated 9.1 years ago by 67k • written 9.1 years ago by ★ 1.5k
4
votes
2
replies
2.2k
views
mapIds to get GO terms
annotationdbi go.db
updated 9.1 years ago by 25k • written 9.1 years ago by ▴ 10
1
vote
2
replies
1.6k
views
SYMBOL is not the official MGI gene symbol?
org.mm.eg.db annotationdbi
updated 6.4 years ago by 67k • written 6.4 years ago by ▴ 20
3
votes
2
replies
1.1k
views
select With Regular Expression
annotationdbi Wildcard
updated 8.6 years ago by ★ 2.1k • written 8.6 years ago by ★ 1.5k
0
votes
2
replies
1.7k
views
agilent zebrafish array annotation
Annotation zebrafish AnnBuilder PROcess AnnotationDbi Annotation zebrafish AnnBuilder
16.8 years ago Georg Otto ▴ 510
0
votes
4
replies
1.2k
views
AnnotationDBI
Annotation GO AnnotationDbi Annotation GO AnnotationDbi
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 50
0
votes
1
reply
1.6k
views
ACCNUM match zero using AnnotationDBI package
GO ChipName AnnBuilder AnnotationDbi GO ChipName AnnBuilder AnnotationDbi
updated 16.3 years ago by ★ 7.2k • written 16.3 years ago by ▴ 120
0
votes
3
replies
1.1k
views
The usage of ls("package:hgu95av2.db") shown in AnnotationDbi.pdf
AnnotationDbi AnnotationDbi
updated 15.4 years ago by 21k • written 15.4 years ago by ▴ 940
0
votes
3
replies
1.7k
views
Error in AnnotationDbi 1.7.8
AnnotationDbi AnnotationDbi
updated 15.5 years ago by ▴ 570 • written 15.4 years ago by ▴ 150
0
votes
2
replies
1.5k
views
GO over representation analysis
Annotation Pathways GO Organism db0 AnnBuilder PROcess maanova AnnotationDbi Annotation
updated 16.4 years ago by ▴ 220 • written 16.4 years ago by ★ 7.2k
3
votes
4
replies
2.2k
views
DGE matrix annotation
DGE DESeq2 AnnotationDbi
updated 6.3 years ago by 67k • written 6.3 years ago by • 0
0
votes
2
replies
2.1k
views
GO terms for E. coli micro arrays (ecoliK12.db generation)
Annotation GO Yeast db0 probe topGO AnnotationDbi Annotation GO Yeast db0 probe topGO
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 20
50 results • Page 1 of 1
Recent ...
Replies
Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k
If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…
Comment: org.Hs.eg.db issue by k.panov • 0
installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(
Comment: MBDseq analysis using qsea package by Lukas ▴ 20
Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…
Comment: DESeq2 analysis with transcript counts by sindhuri • 0
Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…
Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k
Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…
Votes
A: Linear regression in DESeq2
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
Answer: Issue carrying out DiffBind Analysis at a predefined peak set
Answer: Differential variability modelling with vst() expression
Answer: Differential variability modelling with vst() expression
Awards • All
Popular Question to Gordon Smyth 52k
Popular Question to linouhao ▴ 20
Popular Question to spg • 0
Popular Question to otieno43 • 0
Popular Question to svlachavas ▴ 840
Locations • All
WEHI, Melbourne, Australia, 1 minute ago
United States, 10 minutes ago
The city by the bay, 12 minutes ago
Kazakhstan, 15 minutes ago
United KIngdom, 1 hour ago
Traffic: 660 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6