Bioconductor Annotationhub

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303

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 12 days ago by Tim Peters ▴ 170 • written 20 days ago by s.malik • 0

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318

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 7 weeks ago by Michael Love 41k • written 7 weeks ago by Filipe • 0

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151

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annotatr AnnotationHub

12 weeks ago hayleyw • 0

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1.2k

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clusterProfiler Annotationhub

updated 5 months ago by Guido Hooiveld ★ 3.9k • written 5 months ago by BS • 0

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4.6k

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BiocFileCache AnnotationHub ExperimentHub

5 months ago • updated 19 hours ago shepherl 3.8k

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548

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tximeta AnnotationHub AnnotationHubData

6 months ago Thon • 0

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4.3k

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AnnotationHub AnnotationForge Pseudomonas_aeruginosa

updated 4 months ago by James W. MacDonald 65k • written 16 months ago by Manmohit ▴ 10

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5.7k

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 5 weeks ago by shepherl 3.8k • written 2.2 years ago by jon.klonowski ▴ 40

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4.9k

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clusterProfiler AnnotationHub GO uniprot

updated 11 weeks ago by Guido Hooiveld ★ 3.9k • written 3.2 years ago by Alberto • 0

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5.5k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 18 days ago by Shiva • 0 • written 5.4 years ago by Guido Hooiveld ★ 3.9k

10 results • Page 1 of 1

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Comment: Methylation Analysis experiment design using Limma by hortense96 • 0

Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…

Comment: Limma design with continuous and categorical covariates by hortense96 • 0

Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …

Answer: minfi::read.metharray.exp by Basti ▴ 770

Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…

Comment: DESeq2 - dispersion estimation when there is none by WardDeb • 0

Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …

Votes

Answer: OrgDb for maize

Answer: DESeq2 - dispersion estimation when there is none

Comment: Cannabis and KEGGgraph

Answer: Cannabis and KEGGgraph

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Scholar to Gordon Smyth 50k