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annotationhubdata
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1
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AnnotationHub data for Mus musculus seems to be missing, while previously it was there
tximeta
AnnotationHub
AnnotationHubData
5 months ago
Thon
• 0
0
votes
0
replies
358
views
Getting the exon co-ordinates and location
exon
AnnotationHubData
11 months ago
mahima.g
• 0
0
votes
2
replies
963
views
How to fix warning in makeTxDbFromGFF() when using Gencode M30 (mouse)?
GenomicFeatures
AnnotationHubData
tximeta
updated 18 months ago by
Michael Love
41k • written 18 months ago by
Pratik Mehta
▴ 10
0
votes
13
replies
2.7k
views
EnrichGO not working with db created from annotationhub
clusterProfiler
AnnotationHubData
GO
updated 22 months ago by
Guido Hooiveld
★ 3.9k • written 22 months ago by
Lucía
▴ 10
3
votes
3
replies
1.1k
views
I can't run PhyloProfile
AnnotationHubData
PhyloProfile
22 months ago
S.t
▴ 10
3
votes
8
replies
2.4k
views
AnnotationForge::makeOrgPackage GO Ids mistake
AnnotationHubData
AnnotationForge
23 months ago
Saber_J
▴ 10
0
votes
1
reply
606
views
a BioC/R package that display the genome sequence/ mRNA exons/protein domains
AnnotationHubData
updated 3.3 years ago by
Kevin Blighe
★ 3.9k • written 3.3 years ago by
Bogdan
▴ 670
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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