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annotationhubdata
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1
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AnnotationHub data for Mus musculus seems to be missing, while previously it was there
tximeta
AnnotationHub
AnnotationHubData
5 months ago
Thon
• 0
0
votes
0
replies
358
views
Getting the exon co-ordinates and location
exon
AnnotationHubData
10 months ago
mahima.g
• 0
0
votes
2
replies
962
views
How to fix warning in makeTxDbFromGFF() when using Gencode M30 (mouse)?
GenomicFeatures
AnnotationHubData
tximeta
updated 18 months ago by
Michael Love
41k • written 18 months ago by
Pratik Mehta
▴ 10
0
votes
13
replies
2.7k
views
EnrichGO not working with db created from annotationhub
clusterProfiler
AnnotationHubData
GO
updated 22 months ago by
Guido Hooiveld
★ 3.9k • written 22 months ago by
Lucía
▴ 10
3
votes
3
replies
1.1k
views
I can't run PhyloProfile
AnnotationHubData
PhyloProfile
22 months ago
S.t
▴ 10
3
votes
8
replies
2.4k
views
AnnotationForge::makeOrgPackage GO Ids mistake
AnnotationHubData
AnnotationForge
23 months ago
Saber_J
▴ 10
0
votes
1
reply
606
views
a BioC/R package that display the genome sequence/ mRNA exons/protein domains
AnnotationHubData
updated 3.3 years ago by
Kevin Blighe
★ 3.9k • written 3.3 years ago by
Bogdan
▴ 670
7 results • Page
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
Answer: Microarray Limma Model fitting and DEG
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