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annotationtools
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0
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2
replies
333
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Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware
SingleCellData
annotationTools
updated 5 months ago by
ATpoint
★ 4.0k • written 5 months ago by
yw24418
• 0
0
votes
1
reply
354
views
Which species does GO.db use
GO.db
annotationTools
updated 8 months ago by
Lluís Revilla Sancho
▴ 730 • written 8 months ago by
youngleel
• 0
0
votes
3
replies
727
views
Error with AnnotationTrack(gene, name = "Gene Model") part 3 in edX advanced bioconductor
annotationTools
updated 18 months ago by
James W. MacDonald
65k • written 18 months ago by
jt.cathey
• 0
0
votes
0
replies
768
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process
annotationTools
AnnotationFilter
Annotation
biomaRt
2.4 years ago
Shane
• 0
2
votes
10
replies
2.3k
views
Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter
annotationTools
AnnotationHub
AnnotationData
updated 2.5 years ago by
Guido Hooiveld
★ 3.9k • written 2.5 years ago by
Javan Okendo
• 0
0
votes
2
replies
1.1k
views
Error log when I use biomaRt getBM
biomaRt
annotationTools
updated 3.2 years ago by
Mike Smith
★ 6.5k • written 3.2 years ago by
niyamurry
• 0
1
vote
3
replies
1.2k
views
Different microarrays annotations provided by toTable and annotateEset functions
microarray
annotation
annotationdbi
affycoretools
annotationtools
updated 6.3 years ago by
James W. MacDonald
65k • written 6.3 years ago by
eleonoregravier
▴ 70
0
votes
4
replies
1.5k
views
Annotation Tools package
probe
annotationTools
probe
annotationTools
updated 14.7 years ago by
Brad Ander
▴ 20 • written 14.7 years ago by
Yingfang Tian
▴ 20
0
votes
1
reply
1.2k
views
Annotation Tools package
GO
mouse430a2
probe
convert
annotationTools
GO
mouse430a2
probe
convert
annotationTools
updated 14.8 years ago by
Alexandre Kuhn
▴ 20 • written 14.8 years ago by
Giusy Della Gatta
▴ 50
0
votes
0
replies
976
views
annotationTools incorrect use of ortholog
annotationTools
annotationTools
15.8 years ago
Nathan.Watson-Haigh@csiro.au
▴ 210
10 results • Page
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Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
ATpoint
★ 4.0k
As expected normalization is **way** off, meaning in simple terms that the cloud is too high. The deep-blue area should be along y=0. Try t…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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