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annotationtools
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0
votes
2
replies
299
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Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware
SingleCellData
annotationTools
updated 4 months ago by
ATpoint
★ 4.0k • written 4 months ago by
yw24418
• 0
0
votes
1
reply
330
views
Which species does GO.db use
GO.db
annotationTools
updated 8 months ago by
Lluís Revilla Sancho
▴ 730 • written 8 months ago by
youngleel
• 0
0
votes
3
replies
704
views
Error with AnnotationTrack(gene, name = "Gene Model") part 3 in edX advanced bioconductor
annotationTools
updated 17 months ago by
James W. MacDonald
65k • written 17 months ago by
jt.cathey
• 0
0
votes
0
replies
749
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process
annotationTools
AnnotationFilter
Annotation
biomaRt
2.4 years ago
Shane
• 0
2
votes
10
replies
2.2k
views
Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter
annotationTools
AnnotationHub
AnnotationData
updated 2.4 years ago by
Guido Hooiveld
★ 3.9k • written 2.4 years ago by
Javan Okendo
• 0
0
votes
2
replies
1.1k
views
Error log when I use biomaRt getBM
biomaRt
annotationTools
updated 3.2 years ago by
Mike Smith
★ 6.5k • written 3.2 years ago by
niyamurry
• 0
1
vote
3
replies
1.2k
views
Different microarrays annotations provided by toTable and annotateEset functions
microarray
annotation
annotationdbi
affycoretools
annotationtools
updated 6.2 years ago by
James W. MacDonald
65k • written 6.2 years ago by
eleonoregravier
▴ 70
0
votes
4
replies
1.5k
views
Annotation Tools package
probe
annotationTools
probe
annotationTools
updated 14.6 years ago by
Brad Ander
▴ 20 • written 14.6 years ago by
Yingfang Tian
▴ 20
0
votes
1
reply
1.2k
views
Annotation Tools package
GO
mouse430a2
probe
convert
annotationTools
GO
mouse430a2
probe
convert
annotationTools
updated 14.8 years ago by
Alexandre Kuhn
▴ 20 • written 14.8 years ago by
Giusy Della Gatta
▴ 50
0
votes
0
replies
961
views
annotationTools incorrect use of ortholog
annotationTools
annotationTools
15.7 years ago
Nathan.Watson-Haigh@csiro.au
▴ 210
10 results • Page
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
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