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annotationtools
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Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware
SingleCellData
annotationTools
updated 4 months ago by
ATpoint
★ 4.0k • written 4 months ago by
yw24418
• 0
0
votes
1
reply
331
views
Which species does GO.db use
GO.db
annotationTools
updated 8 months ago by
Lluís Revilla Sancho
▴ 730 • written 8 months ago by
youngleel
• 0
0
votes
3
replies
706
views
Error with AnnotationTrack(gene, name = "Gene Model") part 3 in edX advanced bioconductor
annotationTools
updated 17 months ago by
James W. MacDonald
65k • written 17 months ago by
jt.cathey
• 0
0
votes
0
replies
752
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process
annotationTools
AnnotationFilter
Annotation
biomaRt
2.4 years ago
Shane
• 0
2
votes
10
replies
2.2k
views
Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter
annotationTools
AnnotationHub
AnnotationData
updated 2.4 years ago by
Guido Hooiveld
★ 3.9k • written 2.4 years ago by
Javan Okendo
• 0
0
votes
2
replies
1.1k
views
Error log when I use biomaRt getBM
biomaRt
annotationTools
updated 3.2 years ago by
Mike Smith
★ 6.5k • written 3.2 years ago by
niyamurry
• 0
1
vote
3
replies
1.2k
views
Different microarrays annotations provided by toTable and annotateEset functions
microarray
annotation
annotationdbi
affycoretools
annotationtools
updated 6.2 years ago by
James W. MacDonald
65k • written 6.2 years ago by
eleonoregravier
▴ 70
0
votes
4
replies
1.5k
views
Annotation Tools package
probe
annotationTools
probe
annotationTools
updated 14.6 years ago by
Brad Ander
▴ 20 • written 14.7 years ago by
Yingfang Tian
▴ 20
0
votes
1
reply
1.2k
views
Annotation Tools package
GO
mouse430a2
probe
convert
annotationTools
GO
mouse430a2
probe
convert
annotationTools
updated 14.8 years ago by
Alexandre Kuhn
▴ 20 • written 14.8 years ago by
Giusy Della Gatta
▴ 50
0
votes
0
replies
964
views
annotationTools incorrect use of ortholog
annotationTools
annotationTools
15.7 years ago
Nathan.Watson-Haigh@csiro.au
▴ 210
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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