Showing : annotationtools • reset
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Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware SingleCellData annotationTools
updated 5 months ago by ★ 4.0k • written 5 months ago by • 0
0
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1
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369
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Which species does GO.db use
GO.db annotationTools
updated 9 months ago by ▴ 730 • written 9 months ago by • 0
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3
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735
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Error with AnnotationTrack(gene, name = "Gene Model") part 3 in edX advanced bioconductor
annotationTools
updated 18 months ago by 65k • written 18 months ago by • 0
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775
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Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
2.4 years ago Shane • 0
2
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10
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2.3k
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Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter annotationTools AnnotationHub AnnotationData
updated 2.5 years ago by ★ 3.9k • written 2.5 years ago by • 0
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2
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1.1k
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Error log when I use biomaRt getBM
biomaRt annotationTools
updated 3.2 years ago by ★ 6.5k • written 3.2 years ago by • 0
1
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3
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1.2k
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Different microarrays annotations provided by toTable and annotateEset functions
microarray annotation annotationdbi affycoretools annotationtools
updated 6.3 years ago by 65k • written 6.3 years ago by ▴ 70
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4
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1.5k
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Annotation Tools package
probe annotationTools probe annotationTools
updated 14.7 years ago by ▴ 20 • written 14.7 years ago by ▴ 20
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1
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1.2k
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Annotation Tools package
GO mouse430a2 probe convert annotationTools GO mouse430a2 probe convert annotationTools
updated 14.8 years ago by ▴ 20 • written 14.8 years ago by ▴ 50
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annotationTools incorrect use of ortholog
annotationTools annotationTools
15.8 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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