Showing : annotationtools • reset
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Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter annotationTools AnnotationHub AnnotationData
updated 2.5 years ago by ★ 3.9k • written 2.5 years ago by • 0
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4
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Annotation Tools package
probe annotationTools probe annotationTools
updated 14.7 years ago by ▴ 20 • written 14.7 years ago by ▴ 20
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Annotation Tools package
GO mouse430a2 probe convert annotationTools GO mouse430a2 probe convert annotationTools
updated 14.8 years ago by ▴ 20 • written 14.8 years ago by ▴ 50
1
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3
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Different microarrays annotations provided by toTable and annotateEset functions
microarray annotation annotationdbi affycoretools annotationtools
updated 6.3 years ago by 65k • written 6.3 years ago by ▴ 70
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Error log when I use biomaRt getBM
biomaRt annotationTools
updated 3.2 years ago by ★ 6.5k • written 3.2 years ago by • 0
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annotationTools incorrect use of ortholog
annotationTools annotationTools
15.8 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
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Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
2.4 years ago Shane • 0
0
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3
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728
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Error with AnnotationTrack(gene, name = "Gene Model") part 3 in edX advanced bioconductor
annotationTools
updated 18 months ago by 65k • written 18 months ago by • 0
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358
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Which species does GO.db use
GO.db annotationTools
updated 8 months ago by ▴ 730 • written 8 months ago by • 0
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Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware SingleCellData annotationTools
updated 5 months ago by ★ 4.0k • written 5 months ago by • 0
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Votes
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
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