Bioconductor Annotationtrack

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annotationTrack Gviz

updated 9.7 years ago by florian.hahne@novartis.com ★ 1.6k • written 9.8 years ago by Tiphaine Martin ▴ 40

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Gviz gviz-package GFF annotationtrack strand-dependent

updated 6.4 years ago by Robert Ivanek ▴ 750 • written 6.4 years ago by JezDD • 0

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Comment: Heatmap of rnaseq data with z-score scale by James W. MacDonald 68k

`heatmap.2` is a CRAN package, and that's the relevant issue for this plot. It's got nothing to do with `DESeq2` or any other Bioconductor …

Comment: Limma suqeezeVar by Mengchun • 0

Hi Gordon, Thank you for your reply. I'm working on a proteomics data imputation project, I would like to describe the intensity distribut…

Comment: Heatmap of rnaseq data with z-score scale by giovanna • 0

thank you for your reply. I'm sorry if the question is off topic. the analysis and relative construction of the heatmap was done using bioc…

Answer: Heatmap of rnaseq data with z-score scale by James W. MacDonald 68k

Without including the row names for the heatmap, it's impossible to know if the directionality is switched or not. Do note that the orderin…

Comment: Heatmap of rnaseq data with z-score scale by giovanna • 0

![Figure1][1]![Figure2][2] [1]: /media/images/d62918c5-2886-44ae-930d-91d292c3 [2]: /media/images/421df232-8a9c-4016-bc4a-431ca57a

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Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

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