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annotatr
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0
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147
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Annotatr Duplicate Entries
annotatr
AnnotationHub
11 weeks ago
hayleyw
• 0
0
votes
0
replies
136
views
annotatr rn7?
annotatr
3 months ago
chuanjiao6
• 0
0
votes
1
reply
1.1k
views
sampling random regions of same nucleotide composition from hg38 genome
annotatr
regioneR
gkmSVM
updated 5 months ago by
Mahmoud
• 0 • written 3.3 years ago by
rohitsatyam102
▴ 20
0
votes
1
reply
510
views
custom annotations with annotatr
annotatr
11 months ago
luca.s
▴ 50
0
votes
1
reply
818
views
Problem with annotations using annotatr
annotatr
20 months ago
eric.rhoncalderon
• 0
0
votes
0
replies
687
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation
annotatr
2.3 years ago
Ahdee
▴ 50
0
votes
0
replies
788
views
annotatr with custom TxDb
GenomicFeatures
annotatr
genomicFe
3.0 years ago
António Miguel de Jesus Domingues
▴ 490
0
votes
0
replies
815
views
annotatr package: GRanges object contains out-of-bound ranges
annotatr
GenomicRanges
3.5 years ago
Nala
• 0
3
votes
4
replies
1.5k
views
Can't install packages on R or via Bioconductor
R
installation
packages
annotatr
biocmanager
4.0 years ago
dakarai_esgdaille
▴ 10
1
vote
1
reply
1.4k
views
annotatr: CpG Island/Shore/Shelf IDs
annotatr
updated 5.4 years ago by
rcavalca
▴ 140 • written 5.4 years ago by
sorjuelal
• 0
0
votes
3
replies
1.3k
views
CpG site not annotated with annotatr
annotatr
cpg
updated 5.5 years ago by
rcavalca
▴ 140 • written 5.5 years ago by
soli5
• 0
0
votes
1
reply
923
views
ENSEMBL database for annotatr
annotatr
updated 6.2 years ago by
rcavalca
▴ 140 • written 6.2 years ago by
xie186
• 0
2
votes
2
replies
1.1k
views
Unexpected results from annotatr
annotatr
updated 6.2 years ago by
rcavalca
▴ 140 • written 6.2 years ago by
xie186
• 0
2
votes
2
replies
959
views
'fill_order' in annotatr
annotatr
updated 6.2 years ago by
rcavalca
▴ 140 • written 6.2 years ago by
xie186
• 0
1
vote
3
replies
1.4k
views
How can I use Annotatr on CDS?
Annotatr
CDS
Exon
UTR
updated 6.2 years ago by
rcavalca
▴ 140 • written 6.2 years ago by
xie186
• 0
0
votes
3
replies
1.1k
views
find intersections of genomic regions with built-in genomic annotations for S.Cerevisiae
annotatr
7.2 years ago
vivianengoune
• 0
0
votes
2
replies
1.6k
views
annotatr GRanges Error
annotatr
updated 7.2 years ago by
rcavalca
▴ 140 • written 7.2 years ago by
cguzman.roma
• 0
4
votes
2
replies
1.1k
views
Annotatr package not loading certain features
annotatr
updated 7.4 years ago by
Valerie Obenchain
★ 6.8k • written 7.4 years ago by
divyswar01
• 0
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Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
If the counts are too low it in one group then you can't make the comparison either way (whether they are filtered out or just under-powere…
Comment: Estimating Cell Counts for EPIC V2 array data
by
normawiedman059
• 0
0 [103] spam_2.9-1 doParallel_1.0.17 iterators_1.0.14 [106] foreach_1.5.2 beeswarm_0.4.0 tgp_2.4-20 [109] beanplot_1.3.1 fpc_2.2-9 dbscan_1…
Votes
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
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