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annotatr
•
reset
3
votes
4
replies
1.4k
views
Can't install packages on R or via Bioconductor
R
installation
packages
annotatr
biocmanager
4.0 years ago
dakarai_esgdaille
▴ 10
0
votes
3
replies
1.1k
views
find intersections of genomic regions with built-in genomic annotations for S.Cerevisiae
annotatr
7.1 years ago
vivianengoune
• 0
1
vote
3
replies
1.4k
views
How can I use Annotatr on CDS?
Annotatr
CDS
Exon
UTR
updated 6.1 years ago by
rcavalca
▴ 140 • written 6.1 years ago by
xie186
• 0
0
votes
3
replies
1.3k
views
CpG site not annotated with annotatr
annotatr
cpg
updated 5.4 years ago by
rcavalca
▴ 140 • written 5.4 years ago by
soli5
• 0
4
votes
2
replies
1.1k
views
Annotatr package not loading certain features
annotatr
updated 7.4 years ago by
Valerie Obenchain
★ 6.8k • written 7.4 years ago by
divyswar01
• 0
0
votes
2
replies
1.6k
views
annotatr GRanges Error
annotatr
updated 7.1 years ago by
rcavalca
▴ 140 • written 7.2 years ago by
cguzman.roma
• 0
2
votes
2
replies
950
views
'fill_order' in annotatr
annotatr
updated 6.1 years ago by
rcavalca
▴ 140 • written 6.1 years ago by
xie186
• 0
2
votes
2
replies
1.1k
views
Unexpected results from annotatr
annotatr
updated 6.1 years ago by
rcavalca
▴ 140 • written 6.1 years ago by
xie186
• 0
0
votes
1
reply
1.0k
views
sampling random regions of same nucleotide composition from hg38 genome
annotatr
regioneR
gkmSVM
updated 4 months ago by
Mahmoud
• 0 • written 3.3 years ago by
rohitsatyam102
▴ 20
0
votes
1
reply
801
views
Problem with annotations using annotatr
annotatr
20 months ago
eric.rhoncalderon
• 0
0
votes
1
reply
481
views
custom annotations with annotatr
annotatr
11 months ago
luca.s
▴ 50
0
votes
1
reply
911
views
ENSEMBL database for annotatr
annotatr
updated 6.1 years ago by
rcavalca
▴ 140 • written 6.1 years ago by
xie186
• 0
1
vote
1
reply
1.3k
views
annotatr: CpG Island/Shore/Shelf IDs
annotatr
updated 5.3 years ago by
rcavalca
▴ 140 • written 5.3 years ago by
sorjuelal
• 0
0
votes
0
replies
118
views
Annotatr Duplicate Entries
annotatr
AnnotationHub
8 weeks ago
hayleyw
• 0
0
votes
0
replies
796
views
annotatr package: GRanges object contains out-of-bound ranges
annotatr
GenomicRanges
3.4 years ago
Nala
• 0
0
votes
0
replies
771
views
annotatr with custom TxDb
GenomicFeatures
annotatr
genomicFe
2.9 years ago
António Miguel de Jesus Domingues
▴ 490
0
votes
0
replies
124
views
annotatr rn7?
annotatr
11 weeks ago
chuanjiao6
• 0
0
votes
0
replies
669
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation
annotatr
2.3 years ago
Ahdee
▴ 50
18 results • Page
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Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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