Showing : anova • reset
3
votes
14
replies
4.1k
views
Moderated t-test in Anova
anova moderated t-test
updated 8.9 years ago by 50k • written 8.9 years ago by • 0
5
votes
13
replies
2.7k
views
DESeq2 multiple group comparison (ANOVA) with batch effect
DESeq2 DEG ANOVA Batch effect Comparison
updated 4.7 years ago by 41k • written 4.7 years ago by • 0
2
votes
8
replies
3.7k
views
EdgeR. Analysis with pairing across condition and treatment. Design Matrix
edger ANOVA Design matrix
updated 9.2 years ago by 50k • written 9.2 years ago by • 0
1
vote
8
replies
1.4k
views
design versus interaction term similarities and/or differences?
deseq2 ANOVA design interaction term
updated 6.2 years ago by 41k • written 6.2 years ago by • 0
2
votes
6
replies
2.0k
views
Three way-interaction on voom (limma) data, including a factor with > 2 levels
RNASeq limma voom anova
updated 2.1 years ago by ▴ 90 • written 6.8 years ago by ▴ 90
2
votes
6
replies
313
views
How to make boxplot with pairwise and overall p value from Limma
t.test boxplot limma anova
11 days ago Chris • 0
5
votes
6
replies
1.4k
views
nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
limma anova decidetests
updated 5.6 years ago by 50k • written 5.6 years ago by ▴ 270
0
votes
6
replies
4.4k
views
How to perform ANOVA to calculate differential gene expression with three categories
anova
updated 6.8 years ago by 50k • written 6.8 years ago by ▴ 50
0
votes
5
replies
1.8k
views
MetagenomSeq, perform anova or kruskall wallis with three groups ?
metagenomeseq anova metagenomics
7.9 years ago David ▴ 860
2
votes
4
replies
2.8k
views
Compare 3 RNASeq groups with no control in DESeq2
anova RNASeqData tukeyTest DESeq2
3.4 years ago ecg1g15 ▴ 20
3
votes
4
replies
1.4k
views
Pipeline for an Anova-like analysis in edgeR
edgeR anova rna-seq
3.0 years ago Antonio M. • 0
1
vote
4
replies
1.5k
views
DESeq2 ANOVADEV giving strange result
deseq2 anova
updated 7.5 years ago by 41k • written 7.5 years ago by ▴ 20
8
votes
4
replies
5.7k
views
Multiple Comparisons EdgeR
edger multiple comparisons anova glm
updated 8.9 years ago by ★ 7.9k • written 8.9 years ago by ▴ 20
3
votes
4
replies
1.7k
views
how to use edgeR analysis RNA-seq data with a obvious deviation sample
edger RNA-seq anova
updated 8.1 years ago by ★ 28k • written 8.1 years ago by • 0
2
votes
4
replies
1.4k
views
Complex ANOVA analysis in EdgeR
edger anova sequencing
updated 8.2 years ago by ★ 28k • written 8.2 years ago by • 0
3
votes
3
replies
1.8k
views
Differential Expression Analysis in edgeR using Anova
edger anova gene expression Dispersion
updated 4.8 years ago by • 0 • written 5.3 years ago by • 0
3
votes
3
replies
10.0k
views
DESeq2 One-way ANOVA with 3 sample groups?
deseq2 Anova
updated 2.4 years ago by 41k • written 9.6 years ago by ▴ 10
3
votes
3
replies
2.1k
views
Explanation of an ANOVA approach of multiple coefficients in limma with topTable in a microarray analysis
limma ANOVA topTable microarray
updated 7.6 years ago by 50k • written 7.6 years ago by ▴ 80
2
votes
3
replies
1.2k
views
ANOVA Limma
ANOVA limma
updated 3.2 years ago by 65k • written 3.2 years ago by ▴ 10
0
votes
3
replies
1.4k
views
Anova test on gene expression data
Anova gene expression
updated 6.4 years ago by 65k • written 6.4 years ago by • 0
2
votes
3
replies
2.1k
views
edgeR ANOVA-like analysis
edger rnaseq anova
updated 7.1 years ago by ★ 28k • written 7.1 years ago by • 0
2
votes
2
replies
2.1k
views
EdgeR -ANOVA-like test vs testing individual contrasts
EdgeR ANOVA t-test contrast
updated 6.8 years ago by ★ 28k • written 6.8 years ago by • 0
3
votes
2
replies
2.5k
views
EdgeR User Guide. Analysis with multiple factors. Section 3.3.1
edger anova
updated 9.2 years ago by 50k • written 9.2 years ago by • 0
4
votes
2
replies
9.1k
views
DESeq2 LRT output help
deseq2 LRT anova
8.9 years ago rclaire ▴ 20
2
votes
2
replies
545
views
2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip MicroarrayData Anova
18 months ago evan.j.williams ▴ 10
3
votes
1
reply
1.1k
views
ANOVA-like test via treat() in limma
limma anova
updated 5.7 years ago by 50k • written 5.7 years ago by ▴ 120
1
vote
1
reply
847
views
Getting Significance for second factor (bioreplicate/subject) when using limma.
limma anova
updated 5.9 years ago by ★ 28k • written 5.9 years ago by ▴ 10
1
vote
1
reply
734
views
DESeq2 interactions genotype condition code needed
DESeq2 anova condition genotypeeval
updated 3.3 years ago by ★ 4.0k • written 3.3 years ago by ▴ 20
1
vote
1
reply
752
views
How to calculate one way unpaired Anova test with multi column data in R
Anova
updated 6.0 years ago by 65k • written 6.0 years ago by • 0
2
votes
1
reply
3.5k
views
RNA-seq Differential expression using 3 groups
rnaseq anova deseq2 edger genespring
8.7 years ago BM • 0
3
votes
1
reply
1.5k
views
edgeR: glmLRT equivalence between tests with cell means model and factor levels model
edger anova
updated 8.9 years ago by ★ 28k • written 8.9 years ago by • 0
0
votes
1
reply
1.5k
views
edgeR 2-way ANOVA testing
edger ANOVA
updated 5.5 years ago by 50k • written 5.5 years ago by • 0
32 results • Page 1 of 1
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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