Bioconductor Ape

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R ape dnds nan nanotubes

21 months ago Working • 0

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1.2k

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ape msa

updated 2.4 years ago by UBod ▴ 300 • written 2.8 years ago by João Tadeu • 0

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1.3k

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supraHex nlme hexbin ape

updated 6.9 years ago by Martin Morgan 25k • written 6.9 years ago by agneet257 • 0

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ape phyloseq dist metagenomics

7.4 years ago David ▴ 860

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3.9k

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ape bootstrap node phylogenetic tree

9.3 years ago wd ▴ 30

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Answer: Trying to convert ATACseq annotations of non-model species into human orthologs, by James W. MacDonald 67k

I would use the mapper I note above, and build your own `OrgDb`, then do the GO analysis directly. ``` > library(AnnotationForge) > option…

Comment: Trying to convert ATACseq annotations of non-model species into human orthologs, by James W. MacDonald 67k

There's already an `OrgDb` for this species on the AnnotationHub that hypothetically would be ideal, but there are almost no GO mappings, s…

Answer: Trying to convert ATACseq annotations of non-model species into human orthologs, by James W. MacDonald 67k

It's probably not going to work that well using that species, but you can give it a shot. Note that you don't appear to have any good IDs. …

Comment: Trying to convert ATACseq annotations of non-model species into human orthologs, by Guido Hooiveld ★ 4.1k

Not an answer to your question, but it seems the content of the column `Entrez ID` are actually no *entrez ids* but rather *aliases*... Ent…

Answer: ChIPpeakAnno can not load data by hukai916 ▴ 10

`ChIPpeakAnno` stores several example files under its `extdata` directory for demonstration purposes. These files can be found with the `sy…

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