Bioconductor Ape

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875

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R ape dnds nan nanotubes

22 months ago Working • 0

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1.3k

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ape msa

updated 2.5 years ago by UBod ▴ 300 • written 2.9 years ago by João Tadeu • 0

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1.3k

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supraHex nlme hexbin ape

updated 7.0 years ago by Martin Morgan 25k • written 7.0 years ago by agneet257 • 0

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1.4k

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ape phyloseq dist metagenomics

7.5 years ago David ▴ 860

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3.9k

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ape bootstrap node phylogenetic tree

9.3 years ago wd ▴ 30

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Answer: Need help interpreting heatmaps from limma by James W. MacDonald 67k

Heatmaps don't do any comparisons. They just plot the underlying data in a matrix and color the blocks based (in your case) on the by-gene …

Comment: Are transformed values from rlog /vst log2 normalized counts? by Eva ▴ 10

I understood exactly what you said, but I got confused with the documentation and the info that gives about rlog because it seems to be tha…

Answer: featureCounts fails to load annotation file by James W. MacDonald 67k

I imagine Wei Shi will be along later with actual help, but for now do note that you can use an SAF file instead of a GTF. It's easy enough…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 67k

That error indicates that you have a file called NCBI.sqlite in your working directory that is missing some tables. You should delete that …

Comment: Are transformed values from rlog /vst log2 normalized counts? by James W. MacDonald 67k

The `DESeq2` package is meant to analyze count data! Most packages that are intended to be used for RNA-Seq data are going to want the raw …

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Scholar to James W. MacDonald 67k