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ape
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ape - delete bootstrap values (node.labels) less than a certain value
ape
bootstrap
node
phylogenetic
tree
8.8 years ago
wd
▴ 30
0
votes
0
replies
1.3k
views
Phylogenetic tree from marker genes
ape
phyloseq
dist
metagenomics
6.9 years ago
David
▴ 860
0
votes
1
reply
1.1k
views
Issues while downloading supraHex package in Linux
supraHex
nlme
hexbin
ape
updated 6.5 years ago by
Martin Morgan
25k • written 6.5 years ago by
agneet257
• 0
0
votes
1
reply
1.0k
views
Difficulty with msaConvert function in R package
ape
msa
updated 23 months ago by
UBodenhofer
▴ 290 • written 2.3 years ago by
João Tadeu
• 0
0
votes
2
replies
665
views
ape::dnds produces nan value
R
ape
dnds
nan
nanotubes
16 months ago
Working
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Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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