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aroma.light
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Definition of some of the columns in PSCBS segmentation file
aroma.light
affiymetrix
SNP6
PSCBS
parent specific copy number
7.0 years ago
vakul.mohanty
▴ 10
0
votes
0
replies
1.5k
views
Help with aroma.light install
aroma.light
aroma.light
9.9 years ago
Luca Braglia
▴ 10
0
votes
2
replies
1.3k
views
package R.oo (or R.00?), within package R.classes, and function robustPca
aroma.light
pcaMethods
aroma.light
pcaMethods
updated 15.5 years ago by
Sean Davis
21k • written 15.5 years ago by
Tillinghast, Guy, M.D.
▴ 30
0
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1
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849
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aroma.light advice sought
Microarray
limma
aroma.light
Microarray
limma
aroma.light
updated 15.8 years ago by
Henrik Bengtsson
★ 2.4k • written 15.8 years ago by
Iain Gallagher
▴ 930
0
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0
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823
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Combining data from scans at different intensities
limma
aroma.light
limma
aroma.light
17.2 years ago
Gordon Smyth
50k
5 results • Page
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Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
ATpoint
★ 4.0k
Make an MAplot. There is almost certainly an issue with normalization here given the very biased distribution of logFCs as in this Volcano.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
gabriel.hoffman
▴ 100
See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…
Comment: A ComBat-seq issue: the covariates are confounded
by
W. Evan Johnson
▴ 850
This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…
Answer: Different number of exons in reference genome affects DEXSeq analysis
by
Alejandro Reyes
★ 1.9k
Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…
Answer: Adding columns to DEXSeqResults object
by
Alejandro Reyes
★ 1.9k
I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…
Votes
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
A: Using GRanges and IRanges to simply get all chromosome data
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