Showing : arrayquality • reset
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arrayQuality: error from maQualityPlots
arrayQuality
updated 9.0 years ago by 50k • written 17.1 years ago by ▴ 60
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maQualityPlots: cannot coerce type 'S4' to vector of type
arrayQuality arrayQualityMetrics arrayQuality arrayQualityMetrics
10.2 years ago Agnes Paquet ▴ 30
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maQualityPlots: cannot coerce type 'S4' to vector of type 'double'
arrayQuality arrayQuality
10.2 years ago Saket Choudhary ▴ 130
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arrayQuality - maQualityPlots - Error: duplicate switch defaults: 'list(dev =...' and ''
arrayQuality arrayQuality
updated 12.6 years ago by 25k • written 12.6 years ago by ▴ 20
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arrayQuality - maQualityPlots - Error: duplicate switch defaults: 'list(dev =...' and ''
arrayQuality arrayQuality
12.9 years ago Fabio Liberante ▴ 20
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1.2k
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Error using arrayQuality and Agilent txt files
arrayQuality arrayQuality
13.5 years ago F. Javier López ▴ 30
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ArrayQuality package bug in agQuality function - marray package
Microarray arrayQuality Microarray arrayQuality
15.8 years ago Marcus Davy ▴ 680
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problem with arrayQuality in OSX 10.5
arrayQuality arrayQuality
updated 16.1 years ago by ▴ 130 • written 16.1 years ago by ▴ 50
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1.2k
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Agilent CGH data
CGH arrayQuality marray CGH arrayQuality marray
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
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hexbin package installation probs
hexbin arrayQuality hexbin arrayQuality
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 230
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marray and limma error with lmFit
Microarray Biobase DynDoc widgetTools limma arrayQuality marray convert Microarray DynDoc
17.0 years ago Paquet, Agnes ▴ 500
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I would like to know how to run PRvQCHyb in arrayQuality
arrayQuality arrayQuality
17.1 years ago Wonjong Moon ▴ 80
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1.3k
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maQualityPlots on Mac
GUI arrayQuality marray GUI arrayQuality marray
updated 17.6 years ago by ▴ 300 • written 17.6 years ago by 16k
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MEEBO-tool in arrayQuality
GO arrayQuality GO arrayQuality
18.1 years ago Paquet, Agnes ▴ 500
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bugs in arrayQuality and marray
Normalization Biobase hexbin arrayQuality marray Normalization Biobase hexbin arrayQuality
18.4 years ago Paquet, Agnes ▴ 500
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966
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RE: maQualityPlots (qpHexbin) question
hexbin arrayQuality hexbin arrayQuality
18.9 years ago Paquet, Agnes ▴ 500
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841
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maQualityPlots (qpHexbin) question
hexbin arrayQuality hexbin arrayQuality
18.9 years ago Rob J Goedman ▴ 40
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774
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arrayQuality: Error: recursive default argument reference
arrayQuality arrayQuality
19.0 years ago vijayaraj nagarajan ▴ 80
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3
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1.1k
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problem using arrayQuality package
Normalization limma arrayQuality Normalization limma arrayQuality
updated 19.2 years ago by ▴ 500 • written 19.2 years ago by ▴ 510
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1.1k
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Error message when running arrayQuality 1.0.9
arrayQuality marray arrayQuality marray
updated 19.3 years ago by ▴ 500 • written 19.3 years ago by ▴ 10
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4
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1.5k
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issue in arrayQuality package
hexbin arrayQuality hexbin arrayQuality
19.3 years ago Longsi Ran ▴ 30
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861
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can't get release hexbin source package
GO hexbin arrayQuality GO hexbin arrayQuality
19.4 years ago Darlene Goldstein ▴ 230
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871
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Questions on arrayQuality
Cancer arrayQuality Cancer arrayQuality
updated 19.8 years ago by ▴ 500 • written 19.8 years ago by ★ 2.0k
23 results • Page 1 of 1
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Answer: Log-cpm values from limma by Gordon Smyth 50k
The log-cpm values from voom() are not free of batch effect. If you want batch-corrected log-cpm values, we recommend cpm() followed by rem…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by ATpoint ★ 4.0k
As expected normalization is **way** off, meaning in simple terms that the cloud is too high. The deep-blue area should be along y=0. Try t…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
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Answer: OrgDb for maize
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