Showing : arrayquality • reset
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maQualityPlots: cannot coerce type 'S4' to vector of type 'double'
arrayQuality arrayQuality
10.3 years ago Saket Choudhary ▴ 130
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hexbin package installation probs
hexbin arrayQuality hexbin arrayQuality
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 230
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issue in arrayQuality package
hexbin arrayQuality hexbin arrayQuality
19.3 years ago Longsi Ran ▴ 30
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arrayQuality - maQualityPlots - Error: duplicate switch defaults: 'list(dev =...' and ''
arrayQuality arrayQuality
updated 12.6 years ago by 25k • written 12.6 years ago by ▴ 20
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arrayQuality - maQualityPlots - Error: duplicate switch defaults: 'list(dev =...' and ''
arrayQuality arrayQuality
12.9 years ago Fabio Liberante ▴ 20
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bugs in arrayQuality and marray
Normalization Biobase hexbin arrayQuality marray Normalization Biobase hexbin arrayQuality
18.4 years ago Paquet, Agnes ▴ 500
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arrayQuality: error from maQualityPlots
arrayQuality
updated 9.0 years ago by 50k • written 17.1 years ago by ▴ 60
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maQualityPlots on Mac
GUI arrayQuality marray GUI arrayQuality marray
updated 17.7 years ago by ▴ 300 • written 17.7 years ago by 16k
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Agilent CGH data
CGH arrayQuality marray CGH arrayQuality marray
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
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Error using arrayQuality and Agilent txt files
arrayQuality arrayQuality
13.6 years ago • updated 13.5 years ago F. Javier López ▴ 30
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Error message when running arrayQuality 1.0.9
arrayQuality marray arrayQuality marray
updated 19.3 years ago by ▴ 500 • written 19.3 years ago by ▴ 10
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marray and limma error with lmFit
Microarray Biobase DynDoc widgetTools limma arrayQuality marray convert Microarray DynDoc
17.0 years ago Paquet, Agnes ▴ 500
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problem using arrayQuality package
Normalization limma arrayQuality Normalization limma arrayQuality
updated 19.2 years ago by ▴ 500 • written 19.2 years ago by ▴ 510
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problem with arrayQuality in OSX 10.5
arrayQuality arrayQuality
updated 16.1 years ago by ▴ 130 • written 16.1 years ago by ▴ 50
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ArrayQuality package bug in agQuality function - marray package
Microarray arrayQuality Microarray arrayQuality
15.8 years ago Marcus Davy ▴ 680
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maQualityPlots: cannot coerce type 'S4' to vector of type
arrayQuality arrayQualityMetrics arrayQuality arrayQualityMetrics
10.3 years ago Agnes Paquet ▴ 30
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969
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RE: maQualityPlots (qpHexbin) question
hexbin arrayQuality hexbin arrayQuality
18.9 years ago Paquet, Agnes ▴ 500
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873
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Questions on arrayQuality
Cancer arrayQuality Cancer arrayQuality
updated 19.8 years ago by ▴ 500 • written 19.8 years ago by ★ 2.0k
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MEEBO-tool in arrayQuality
GO arrayQuality GO arrayQuality
18.1 years ago Paquet, Agnes ▴ 500
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865
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can't get release hexbin source package
GO hexbin arrayQuality GO hexbin arrayQuality
19.5 years ago Darlene Goldstein ▴ 230
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845
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maQualityPlots (qpHexbin) question
hexbin arrayQuality hexbin arrayQuality
18.9 years ago Rob J Goedman ▴ 40
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I would like to know how to run PRvQCHyb in arrayQuality
arrayQuality arrayQuality
17.2 years ago Wonjong Moon ▴ 80
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arrayQuality: Error: recursive default argument reference
arrayQuality arrayQuality
19.0 years ago vijayaraj nagarajan ▴ 80
23 results • Page 1 of 1
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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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