Showing : arrayqualitymetrics • reset
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arrayQualityMetrics: Binning grid too coarse for current (small) bandwidth
arrayQualityMetrics arrayQualityMetrics
updated 14.1 years ago by ▴ 110 • written 14.1 years ago by ▴ 50
4
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6
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4.5k
views
arrayQualityMetrics with DESeq2
arrayqualitymetrics deseq2 sample outliers
9.3 years ago rachelwright8 ▴ 10
10
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10
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3.8k
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arrayQualityMetrics does not complete successfully
arrayqualitymetrics
updated 7.5 years ago by ▴ 10 • written 8.2 years ago by ▴ 10
6
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11
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3.7k
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arrayQualityMetrics: "All SVG style attribute must have length 1" and other errors
arrayqualitymetrics svg software error
updated 7.8 years ago by ▴ 40 • written 9.3 years ago by ▴ 200
0
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1
reply
3.0k
views
2 way anova in Bioconductor
Microarray GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics BRAIN
updated 12.8 years ago by ▴ 210 • written 12.8 years ago by ▴ 110
1
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2
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2.6k
views
arrayQualityMetrics unable to find an inherited method for function \"platformspecific\", for signature \"character\"
arrayQualityMetrics arrayQualityMetrics
12.1 years ago Guest User ★ 13k
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4
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2.5k
views
in-group missing arrayQualityMetrics()
arrayQualityMetrics arrayQualityMetrics
updated 10.2 years ago by ★ 13k • written 10.2 years ago by ★ 13k
1
vote
2
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2.4k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 8.1 years ago by 50k • written 8.1 years ago by • 0
1
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3
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2.4k
views
Installing arrayQualityMetrics: ERROR: lazy loading failed
arrayqualitymetrics beadarray
7.8 years ago • updated 4.8 years ago Lluís Revilla Sancho ▴ 730
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8
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2.4k
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CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
miRNA GO cdf affy arrayQualityMetrics miRNA GO cdf affy arrayQualityMetrics
updated 11.5 years ago by 65k • written 11.5 years ago by ▴ 290
2
votes
4
replies
2.3k
views
arrayQualityMetrics error: Error: Unknown parameters: cex.axis
affy microarray arrayqualitymetrics
updated 8.3 years ago by ★ 13k • written 8.3 years ago by ▴ 30
0
votes
16
replies
2.3k
views
arrayQualityMetrics error
arrayQualityMetrics arrayQualityMetrics
updated 13.2 years ago by ▴ 340 • written 13.2 years ago by ▴ 200
0
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13
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2.3k
views
arrayQualityMetrics error and question
cdf arrayQualityMetrics cdf arrayQualityMetrics
updated 12.1 years ago by ★ 13k • written 12.1 years ago by ▴ 280
0
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14
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2.1k
views
arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 13.1 years ago by ★ 13k • written 13.1 years ago by ▴ 210
0
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2
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1.9k
views
arrayQualityMetrics is not working
arrayQualityMetrics arrayQualityMetrics
updated 13.2 years ago by ★ 13k • written 13.2 years ago by ▴ 60
0
votes
6
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1.9k
views
2 way anova in Bioconductor
GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics GO genefilter
updated 12.8 years ago by ★ 2.0k • written 12.8 years ago by ▴ 110
3
votes
1
reply
1.9k
views
arrayQualityMetrics for Agilent one color data
Normalization limma arrayQualityMetrics Normalization limma arrayQualityMetrics
updated 10.4 years ago by 65k • written 10.4 years ago by ▴ 50
1
vote
3
replies
1.8k
views
Error arrayQualityMetrics
arrayQualityMetrics
updated 2.5 years ago by ★ 6.5k • written 2.5 years ago by • 0
0
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2
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1.8k
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arrayQualityMetrics and lumi - failure to load in R2.15.1 windows
lumi arrayQualityMetrics lumi arrayQualityMetrics
updated 11.4 years ago by ★ 13k • written 11.4 years ago by ▴ 480
0
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4
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1.8k
views
arrayQualityMetrics package - bugs and errors
limma affyPLM arrayQualityMetrics limma affyPLM arrayQualityMetrics
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ▴ 90
0
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8
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1.7k
views
Problems using arrayQualityMetrics
Cancer arrayQualityMetrics Cancer arrayQualityMetrics
12.1 years ago Rosalind Cutts ▴ 20
0
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10
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1.7k
views
arrayQualityMetrics not producing all diagnostic plots
arrayQualityMetrics arrayQualityMetrics
13.5 years ago James F. Reid ▴ 610
0
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1
reply
1.7k
views
arrayQualityMetrics - undefined columns selected
Microarray arrayQualityMetrics Microarray arrayQualityMetrics
updated 10.5 years ago by ★ 13k • written 10.5 years ago by ▴ 50
0
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3
replies
1.7k
views
Unable to execute java by using the Rscript
arrayqualitymetrics java r
8.9 years ago aaryan • 0
0
votes
3
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1.6k
views
arrayQualityMetrics Error
cdf affy arrayQualityMetrics cdf affy arrayQualityMetrics
updated 14.3 years ago by ▴ 630 • written 14.3 years ago by ▴ 160
4
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3
replies
1.5k
views
arrayQualityMetrics error with one color array and log transform
arrayqualitymetrics bugs error
updated 9.5 years ago by 65k • written 9.5 years ago by • 0
0
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1
reply
1.5k
views
Problem with NChannelSet objects using Agilent Data with arrayQualityMetrics package
arrayQualityMetrics ArrayExpress arrayQualityMetrics ArrayExpress
updated 10.2 years ago by ★ 13k • written 10.2 years ago by ▴ 20
0
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1
reply
1.5k
views
arrayQualityMetrics - how do I use this with an MAList object???
Cancer convert arrayQualityMetrics Cancer convert arrayQualityMetrics
updated 15.6 years ago by ▴ 680 • written 15.6 years ago by 25k
0
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3
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1.5k
views
arrayQualityMetrics does not produce interactive plots
arrayQualityMetrics arrayQualityMetrics
updated 10.5 years ago by ▴ 10 • written 10.5 years ago by ★ 13k
0
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2
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1.4k
views
reading single channel Agilent data with limma [was arrayQualityMetrics d...
affy limma arrayQualityMetrics affy limma arrayQualityMetrics
11.9 years ago Alogmail2@aol.com ▴ 90
0
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2
replies
1.4k
views
Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix
updated 6.7 years ago by 65k • written 6.7 years ago by • 0
0
votes
6
replies
1.4k
views
arrayQualityMetrics error with MAList
convert arrayQualityMetrics convert arrayQualityMetrics
updated 12.1 years ago by ★ 13k • written 12.2 years ago by ▴ 10
0
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3
replies
1.4k
views
XPS package QC data
affy arrayQualityMetrics xps affy arrayQualityMetrics xps
updated 10.7 years ago by ★ 3.9k • written 10.7 years ago by ▴ 40
0
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1
reply
1.4k
views
reading single channel Agilent data with limma [was arrayQualityMetrics doesn't work...]
affy limma arrayQualityMetrics affy limma arrayQualityMetrics
updated 11.9 years ago by ★ 13k • written 11.9 years ago by 50k
0
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6
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1.4k
views
arrayQualityMetrics NULL XML-node Error; Anyone still getting this?
arrayQualityMetrics arrayQualityMetrics
updated 12.6 years ago by ★ 13k • written 12.6 years ago by ▴ 30
0
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0
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1.4k
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Go terms attributes not available on Biomart, ensembl
miRNA GO probe limma matchprobes biomaRt arrayQualityMetrics microRNA miRNA GO probe
12.9 years ago chawla ▴ 190
0
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4
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1.4k
views
svg error in arrayQualityMetrics
GO arrayQualityMetrics GO arrayQualityMetrics
updated 10.1 years ago by ▴ 750 • written 10.1 years ago by ▴ 300
2
votes
1
reply
1.4k
views
arrayQualityMetrics: "intgroup" error, groups dropped from x$pData.
arrayqualitymetrics R
updated 6.3 years ago by ★ 6.5k • written 6.3 years ago by ▴ 30
0
votes
4
replies
1.3k
views
Printing arrayQualityMetrics report
convert arrayQualityMetrics convert arrayQualityMetrics
updated 11.8 years ago by ★ 13k • written 11.8 years ago by ▴ 280
0
votes
4
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1.3k
views
Quality control;Missing value;installation
Cancer cdf affy affyQCReport affyio arrayQualityMetrics Cancer cdf affy affyQCReport
updated 15.7 years ago by ★ 5.5k • written 15.7 years ago by ▴ 200
0
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0
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1.3k
views
arrayQualityMetrics package - bugs and errors
limma affyPLM convert arrayQualityMetrics limma affyPLM convert arrayQualityMetrics
12.1 years ago Wolfgang Huber ★ 13k
1
vote
1
reply
1.3k
views
arrayQualityMetrics for outlier detection
arrayQualityMetrics Microarray Outlier
updated 8.4 years ago by ★ 13k • written 8.4 years ago by ▴ 10
0
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3
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1.3k
views
arrayQualityMetrics produces non-interactive PCA plot (Figure 3)
arrayQualityMetrics arrayQualityMetrics
12.4 years ago Vladimir Zhurov ▴ 70
0
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3
replies
1.3k
views
arrayQualityMetrics run as batch-job: unable to start device PNG
arrayQualityMetrics arrayQualityMetrics
updated 11.4 years ago by 65k • written 11.4 years ago by ▴ 20
0
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2
replies
1.2k
views
arrayQualityMEtrics
convert arrayQualityMetrics convert arrayQualityMetrics
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ▴ 210
0
votes
5
replies
1.2k
views
quality control analysis
arrayqualitymetrics
updated 7.6 years ago by 65k • written 7.6 years ago by ▴ 20
0
votes
2
replies
1.2k
views
ArrayQualityMetrics: Problem with labels in plots
Annotation arrayQualityMetrics Annotation arrayQualityMetrics
14.5 years ago elliot harrison ▴ 230
0
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0
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1.2k
views
argument "intgroup" is missing in arrayQualityMetrics
arrayQualityMetrics
8.0 years ago 13117882295 • 0
0
votes
1
reply
1.2k
views
XPS package QC data
affy arrayQualityMetrics xps affy arrayQualityMetrics xps
10.7 years ago • updated 10.6 years ago cstrato ★ 3.9k
0
votes
3
replies
1.2k
views
arrayQualityMetrics
cdf arrayQualityMetrics cdf arrayQualityMetrics
updated 16.4 years ago by ▴ 280 • written 16.4 years ago by ▴ 270
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Comment: minfi::read.metharray.exp by clacarion • 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp by clacarion • 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Answer: List of Deprecated Packages for Bioc3.19 by shepherl 3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Votes
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
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