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arrays
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6
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rhdf5 package and arrays in R
array
R
rhdf5
arrays
h5
updated 9.1 years ago by
Nathaniel Hayden
▴ 180 • written 9.1 years ago by
FabioF
• 0
3
votes
5
replies
1.5k
views
Use of arrayWeights with two treatment groups
Microarray
arrays
limma
MicroarrayData
updated 2.7 years ago by
Gordon Smyth
50k • written 2.8 years ago by
Emma
• 0
1
vote
2
replies
962
views
limma - removing samples?
ArrayExpress
limma
arrays
2.9 years ago
RMP87
• 0
0
votes
2
replies
1.6k
views
Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC
arrays
limma
minfi
Epigenetics
updated 3.4 years ago by
Gordon Smyth
50k • written 3.4 years ago by
Jeff
▴ 20
1
vote
1
reply
638
views
Weight Array Quality before of after applying variance filtering?
limma
arrays
genefilter
updated 20 months ago by
James W. MacDonald
65k • written 20 months ago by
jacorvar
▴ 40
1
vote
1
reply
1.2k
views
How do I adjust for other factors in Limma differential expression analysis?
limma
Microarray
MicroarrayData
arrays
updated 2.9 years ago by
Kevin Blighe
★ 3.9k • written 2.9 years ago by
Emma
• 0
0
votes
0
replies
328
views
Illumina global SNP screeing array
illuminaHumanv3.db
arrays
10 months ago
DH
• 0
7 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
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